Biological systems are often treated as time-invariant by computational models that use fixed parameter values. In this study, we demonstrate that the behavior of the p53-MDM2 gene network in individual cells can be tracked using adaptive filtering algorithms and the resulting time-variant models can approximate experimental measurements more accurately than time-invariant models. Adaptive models with time-variant parameters can help reduce modeling complexity and can more realistically represent biological systems
Background: The modeling of Biological Regulatory Networks (BRNs) relies on background knowledge, de...
Kondofersky I, Fuchs C, Theis FJ. Identifying latent dynamic components in biological systems. IET S...
In computational systems biology, the general aim is to derive regulatory models from multivariate r...
<div><p>Biological systems are often treated as time-invariant by computational models that use fixe...
Dynamic gene-regulatory networks are complex since the interaction patterns between their components...
In gene network estimation from time series microarray data, dynamic models such as differential equ...
Most existing methods used for gene regulatory network modeling are dedicated to inference of steady...
<p>(<b>a</b>) Models describe relationships between measured input and output data. They are subject...
Time-course omics experiments enable the reconstruction of the dynamics of the cellular regulatory n...
<p>Supplementary material to a manuscript under review. The manuscript can be downloaded from the li...
In this chapter, we review the problem of network inference from time-course data, focusing on a cla...
<b>Motivation:</b> Inherent non-linearities in biomolecular interactions make the identi...
The recent finding of functional motifs (by Uri Alon an co-workers) in gene regulatory networks has ...
This chapter presents a survey of recent methods for reconstruction of time-varying biological netwo...
The problem of modeling the dynamical regulation process within a gene network has been of great int...
Background: The modeling of Biological Regulatory Networks (BRNs) relies on background knowledge, de...
Kondofersky I, Fuchs C, Theis FJ. Identifying latent dynamic components in biological systems. IET S...
In computational systems biology, the general aim is to derive regulatory models from multivariate r...
<div><p>Biological systems are often treated as time-invariant by computational models that use fixe...
Dynamic gene-regulatory networks are complex since the interaction patterns between their components...
In gene network estimation from time series microarray data, dynamic models such as differential equ...
Most existing methods used for gene regulatory network modeling are dedicated to inference of steady...
<p>(<b>a</b>) Models describe relationships between measured input and output data. They are subject...
Time-course omics experiments enable the reconstruction of the dynamics of the cellular regulatory n...
<p>Supplementary material to a manuscript under review. The manuscript can be downloaded from the li...
In this chapter, we review the problem of network inference from time-course data, focusing on a cla...
<b>Motivation:</b> Inherent non-linearities in biomolecular interactions make the identi...
The recent finding of functional motifs (by Uri Alon an co-workers) in gene regulatory networks has ...
This chapter presents a survey of recent methods for reconstruction of time-varying biological netwo...
The problem of modeling the dynamical regulation process within a gene network has been of great int...
Background: The modeling of Biological Regulatory Networks (BRNs) relies on background knowledge, de...
Kondofersky I, Fuchs C, Theis FJ. Identifying latent dynamic components in biological systems. IET S...
In computational systems biology, the general aim is to derive regulatory models from multivariate r...