The use of electrostatic cutoffs in calculations of free energy differences by molecular simulations introduces errors. Even though both solute-solvent and solvent-solvent cutoffs are known to create discrepancies, past efforts have mostly been directed toward correcting for the solute-solvent cutoffs. In this work, an approach based on the generalized reaction field formalism is developed to correct for the solvent-solvent cutoff errors as well. It is shown using a series of simulations that when the cutoff lengths are significantly smaller than the half unit cell size, and the solute-solvent cutoff is not much larger than the solvent-solvent cutoff, the new algorithm is able to yield better agreement among simulations employing different ...
A class of simple expressions of increasing accuracy for the free‐energy difference between two stat...
Hydration free energy calculations in explicit solvent have become an integral part of binding free ...
We report a fully general technique addressing a long standing challenge of calculating conformation...
A recently developed algorithm based on the continuum treatment of the solvent molecules beyond the ...
Hdration has an important influence on biomolecular processes in aqueous solution like ligand bindin...
Replica-exchange enveloping distribution sampling (RE-EDS) is a pathway-independent multistate free-...
The use of molecular dynamics simulations to provide atomic-level descriptions of biological process...
Partition coefficients describe how a solute is distributed between two immiscible solvents. They ar...
Free energy calculations based on molecular dynamics simulations show considerable promise for appli...
One common objective of molecular simulations in chemistry and biology is to calcu-late the free ene...
Calculating free energy differences is a topic of substantial interest and has many applications inc...
When simulating a molecular system, a cutoff distance for interactions is often used to speed up the...
Hydration free energies of small molecules are commonly used as benchmarks for solvation models. How...
The use of molecular dynamics simulations to provide atomic-level descriptions of biological process...
International audienceFree energy simulations for electrostatic and charging processes in complex mo...
A class of simple expressions of increasing accuracy for the free‐energy difference between two stat...
Hydration free energy calculations in explicit solvent have become an integral part of binding free ...
We report a fully general technique addressing a long standing challenge of calculating conformation...
A recently developed algorithm based on the continuum treatment of the solvent molecules beyond the ...
Hdration has an important influence on biomolecular processes in aqueous solution like ligand bindin...
Replica-exchange enveloping distribution sampling (RE-EDS) is a pathway-independent multistate free-...
The use of molecular dynamics simulations to provide atomic-level descriptions of biological process...
Partition coefficients describe how a solute is distributed between two immiscible solvents. They ar...
Free energy calculations based on molecular dynamics simulations show considerable promise for appli...
One common objective of molecular simulations in chemistry and biology is to calcu-late the free ene...
Calculating free energy differences is a topic of substantial interest and has many applications inc...
When simulating a molecular system, a cutoff distance for interactions is often used to speed up the...
Hydration free energies of small molecules are commonly used as benchmarks for solvation models. How...
The use of molecular dynamics simulations to provide atomic-level descriptions of biological process...
International audienceFree energy simulations for electrostatic and charging processes in complex mo...
A class of simple expressions of increasing accuracy for the free‐energy difference between two stat...
Hydration free energy calculations in explicit solvent have become an integral part of binding free ...
We report a fully general technique addressing a long standing challenge of calculating conformation...