Add to ORKGSummary: We present a new method to incrementally construct the FM-index for both short and long sequence reads, up to the size of a genome. It is the first algorithm that can build the index while implicitly sorting the sequences in the reverse (complement) lexicographical order without a separate sorting step. The implementation is among the fastest for indexing short reads and the only one that practically works for reads of averaged kilobases in length
Biology researchers have a pressing need for data management technologies which will make the storag...
International audienceMapping reads against a genome sequence is an interesting and useful problem i...
International audienceLarge corpura of texts or of sequences serve as references and are interrogate...
Summary: We present a new method to incrementally construct the FM-index for both short and long seq...
Summary: We present a new method to incrementally construct the FM-index for both short and long seq...
The FM-index is a data structure used in genomics for exact search of input sequences over large ref...
While short read aligners, which predominantly use the FM-index, are able to easily index one or a f...
The rapid development of DNA sequencing technologies has demanded for com- pressed data structures ...
Background Processing of reads from high throughput sequencing is often done in term...
Sequence data is one of the rapidly growing types of data. New efficient and scalable techniques are...
Biology researchers have a pressing need for data management technologies which will make the storag...
In the biological sciences, sequence analysis refers to analytical investigations that use nucleic a...
International audienceWith High Throughput Sequencing (HTS) technologies, biology is experiencing a ...
The FM-index is a succinct text index needing only O(Hkn) bits of space, where n is the text size an...
Motivation: Recent experimental studies on compressed indexes (BWT, CSA, FM-index) have confirmed th...
Biology researchers have a pressing need for data management technologies which will make the storag...
International audienceMapping reads against a genome sequence is an interesting and useful problem i...
International audienceLarge corpura of texts or of sequences serve as references and are interrogate...
Summary: We present a new method to incrementally construct the FM-index for both short and long seq...
Summary: We present a new method to incrementally construct the FM-index for both short and long seq...
The FM-index is a data structure used in genomics for exact search of input sequences over large ref...
While short read aligners, which predominantly use the FM-index, are able to easily index one or a f...
The rapid development of DNA sequencing technologies has demanded for com- pressed data structures ...
Background Processing of reads from high throughput sequencing is often done in term...
Sequence data is one of the rapidly growing types of data. New efficient and scalable techniques are...
Biology researchers have a pressing need for data management technologies which will make the storag...
In the biological sciences, sequence analysis refers to analytical investigations that use nucleic a...
International audienceWith High Throughput Sequencing (HTS) technologies, biology is experiencing a ...
The FM-index is a succinct text index needing only O(Hkn) bits of space, where n is the text size an...
Motivation: Recent experimental studies on compressed indexes (BWT, CSA, FM-index) have confirmed th...
Biology researchers have a pressing need for data management technologies which will make the storag...
International audienceMapping reads against a genome sequence is an interesting and useful problem i...
International audienceLarge corpura of texts or of sequences serve as references and are interrogate...
