Accurate identification of HCV sequence variants using deep sequencing with a primer ID

ve-SEQ: Robust, unbiased enrichment for streamlined detection and whole-genome sequencing of HCV and other highly diverse pathogens

Bowden, R
Bonsall, D
Ansari, M
Ip, C
Trebes, A
Brown, A
Klenerman, P
Buck, D
Piazza, P
Barnes, E

January 2015

The routine availability of high-depth virus sequence data would allow the sensitive detection of re...

Multitypic hepatitis C virus infection identified by real-time nucleotide sequencing of minority genotypes

Buckton, Andrew J
Ngui, Siew-Lin
Arnold, Catherine
Boast, Katie
Kovacs, Joanne
Klapper, Paul E
Patel, Bharat
Ibrahim, Imad
Rangarajan, Savita
Ramsay, Mary E
Teo, Chong-Gee

August 2006

The prevalence of concurrent multitypic hepatitis C virus (HCV) infection is uncertain. A sensitive ...

ve-SEQ: Robust, unbiased enrichment for streamlined detection and whole-genome sequencing of HCV and other highly diverse pathogens [version 1; referees: 2 approved]

David Bonsall
M. Azim Ansari
Camilla Ip
Amy Trebes
Anthony Brown
Paul Klenerman
David Buck
STOP-HCV Consortium
Paolo Piazza
Eleanor Barnes
Rory Bowden

October 2015

The routine availability of high-depth virus sequence data would allow the sensitive detection of re...

Deep sequencing is an appropriate tool for the selection of unique Hepatitis C virus (HCV) variants after single genomic amplification.

Thibault Guinoiseau
Alain Moreau
Guillaume Hohnadel
Nicole Ngo-Giang-Huong
Celine Brulard
Patrick Vourc'h
Alain Goudeau
Catherine Gaudy-Graffin

January 2017

Hepatitis C virus (HCV) evolves rapidly in a single host and circulates as a quasispecies wich is a ...

Deep sequencing is an appropriate tool for the selection of unique Hepatitis C virus (HCV) variants after single genomic amplification

Guinoiseau, T.
Moreau, A.
Hohnadel, G.
Ngo-Giang-Huong, Nicole
Brulard, C.
Vourc'h, P.
Goudeau, A.
Gaudy-Graffin, C.

January 2017

Hepatitis C virus (HCV) evolves rapidly in a single host and circulates as a quasispecies wich is a ...

Differentiation of acute from chronic hepatitis C virus infection by nonstructural 5B deep sequencing: A population-level tool for incidence estimation

Montoya, V
Olmstead, AD
Janjua, NZ
Tang, P
Grebely, J
Cook, D
Richard Harrigan, P
Krajden, M

June 2015

The ability to classify acute versus chronic hepatitis C virus (HCV) infections at the time of diagn...

Hepatitis C Virus Transmission Bottlenecks Analyzed by Deep Sequencing

Wang, G. P.
Sherrill-Mix, S. A.
Chang, K. M.
Quince, C.
Bushman, F. D.

January 2010

Hepatitis C virus (HCV) replication in infected patients produces large and diverse viral population...

Comparison of next generation sequencing technologies for the comprehensive assessment of full-length hepatitis C viral genomes.

Thomson, E
Ip, C
Badhan, A
Christiansen, M
Adamson, W
Ansari, M
Bibby, D
Breuer, J
Brown, A
Bowden, R
Bryant, J
Bonsall, D
Da Silva Filipe, A
Hinds, C
Hudson, E
Klenerman, P
Lythgow, K
Mbisa, J
McLauchlan, J
Myers, R
Piazza, P
Roy, S
Trebes, A
Vattipally, S
Witteveldt, J
STOP-HCV consortium
Barnes, E
Simmonds, P

January 2016

Affordable next generation sequencing (NGS) technologies for hepatitis C virus (HCV) may potentially...

Comparison of next-generation sequencing technologies for comprehensive assessment of full-length hepatitis C viral genomes

Thomson, E
Ip, C
Badhan, A
Christiansen, M
Adamson, W
Ansari, M
Bibby, D
Breuer, J
Brown, A
Bowden, R
Bryant, J
Bonsall, D
Da Silva Filipe, A
Hinds, C
Hudson, E
Klenerman, P
Lythgow, K
Mbisa, J
McLauchlan, J
Myers, R
Piazza, P
Roy, S
Trebes, A
Sreenu, V
Witteveldt, J
Barnes, E
Simmonds, P

January 2016

Affordable next-generation sequencing (NGS) technologies for hepatitis C virus (HCV) may potentially...

Ultra-deep sequencing and bioinformatics approach to detect natural resistance-associated variants in DAA-naïve HCV positive patients

Marascio, Nadia
Pavia, Grazia
Strazzulla, Alessio
Dierckx, Tim
Cuypers, Lize
Vrancken, Bram
Barreca, Giorgio Settimo
Mirante, Teresa
Malanga, Donatella
Viglietto, Giuseppe
Vandamme, Anne-Mieke
Torti, Carlo
Liberto, Maria Carla
Focà, Alfredo

May 2016

Background: Resistance-associated variants (RAVs) emerge in HCV viral quasispecies at low frequency,...

Hepatitis C virus transmission bottlenecks analyzed by deep sequencing

Gary P. Wang
Scott A. Sherrill-mix
Kyong-mi Chang
Chris Quince
Frederic D. Bushman

January 2010

Hepatitis C virus (HCV) replication in infected patients produces large and diverse viral population...

Primer ID ultra-deep sequencing reveals dynamics of drug resistance-associated variants in breakthrough hepatitis C viruses: Relevance to treatment outcome and resistance screening

Barnard, R.
Chopra, A.
James, I.
Blinco, J.
Watson, M.W.
Jabara, C.B.
Hazuda, D.
Lemon, S.M.
Mallal, S.
Gaudieri, S.

January 2016

Background: Use of direct-acting antiviral drugs (DAAs) that target the Hepatitis C virus may be ham...

A method for near full-length amplification and sequencing for six hepatitis C virus genotypes

Bull, RA
Eltahla, AA
Rodrigo, C
Koekkoek, SM
Walker, M
Pirozyan, MR
Betz-Stablein, B
Toepfer, A
Laird, M
Oh, S
Heiner, C
Maher, L
Schinkel, J
Lloyd, AR
Luciani, F

March 2016

Background: Hepatitis C virus (HCV) is a rapidly evolving RNA virus that has been classified into se...

Comparison of next generation sequencing technologies for the comprehensive assessment of full-length hepatitis C viral genomes

Ip, CLC
Ansari, MA
Brown, A
Bowden, R
Bonsall, D
Hudson, E
Klenerman, P
Piazza, P
Trebes, A
Barnes, E
Simmonds, P
STOP-HCV Consortium

July 2016

Affordable next generation sequencing (NGS) technologies for hepatitis C virus (HCV) may potentially...

High-resolution hepatitis C virus subtyping using NS5B deep sequencing and phylogeny, an alternative to current methods.

Quer, Josep
Gregori, Josep
Rodríguez-Frias, Francisco
Buti, Maria
Madejon, Antonio
Perez-del-Pulgar, Sofia
Garcia-Cehic, Damir
Casillas, Rosario
Blasi, Maria
Homs, Maria
Tabernero, David
Alvarez-Tejado, Miguel
Muñoz, Jose Manuel
Cubero, Maria
Caballero, Andrea
del Campo, Jose Antonio
Domingo, Esteban
Belmonte, Irene
Nieto, Leonardo
Lens, Sabela
Muñoz-de-Rueda, Paloma
Sanz-Cameno, Paloma
Sauleda, Silvia
Bes, Marta
Gomez, Jordi
Briones, Carlos
Perales, Celia
Sheldon, Julie
Castells, Lluis
Viladomiu, Lluis
Salmeron, Javier
Ruiz-Extremera, Angela
Quiles-Pérez, Rosa
Moreno-Otero, Ricardo
López-Rodríguez, Rosario
Allende, Helena
Romero-Gómez, Manuel
Guardia, Jaume
Esteban, Rafael
Garcia-Samaniego, Javier
Forns, Xavier
Esteban, Juan Ignacio

January 2015

Journal Article; Research Support, Non-U.S. Gov't; Corrección...

ve-SEQ: Robust, unbiased enrichment for streamlined detection and whole-genome sequencing of HCV and other highly diverse pathogens

Bowden, R
Bonsall, D
Ansari, M
Ip, C
Trebes, A
Brown, A
Klenerman, P
Buck, D
Piazza, P
Barnes, E

January 2015

The routine availability of high-depth virus sequence data would allow the sensitive detection of re...

Multitypic hepatitis C virus infection identified by real-time nucleotide sequencing of minority genotypes

Buckton, Andrew J
Ngui, Siew-Lin
Arnold, Catherine
Boast, Katie
Kovacs, Joanne
Klapper, Paul E
Patel, Bharat
Ibrahim, Imad
Rangarajan, Savita
Ramsay, Mary E
Teo, Chong-Gee

August 2006

The prevalence of concurrent multitypic hepatitis C virus (HCV) infection is uncertain. A sensitive ...

ve-SEQ: Robust, unbiased enrichment for streamlined detection and whole-genome sequencing of HCV and other highly diverse pathogens [version 1; referees: 2 approved]

David Bonsall
M. Azim Ansari
Camilla Ip
Amy Trebes
Anthony Brown
Paul Klenerman
David Buck
STOP-HCV Consortium
Paolo Piazza
Eleanor Barnes
Rory Bowden

October 2015

The routine availability of high-depth virus sequence data would allow the sensitive detection of re...

Deep sequencing is an appropriate tool for the selection of unique Hepatitis C virus (HCV) variants after single genomic amplification.

Thibault Guinoiseau
Alain Moreau
Guillaume Hohnadel
Nicole Ngo-Giang-Huong
Celine Brulard
Patrick Vourc'h
Alain Goudeau
Catherine Gaudy-Graffin

January 2017

Hepatitis C virus (HCV) evolves rapidly in a single host and circulates as a quasispecies wich is a ...

Deep sequencing is an appropriate tool for the selection of unique Hepatitis C virus (HCV) variants after single genomic amplification

Guinoiseau, T.
Moreau, A.
Hohnadel, G.
Ngo-Giang-Huong, Nicole
Brulard, C.
Vourc'h, P.
Goudeau, A.
Gaudy-Graffin, C.

January 2017

Hepatitis C virus (HCV) evolves rapidly in a single host and circulates as a quasispecies wich is a ...

Differentiation of acute from chronic hepatitis C virus infection by nonstructural 5B deep sequencing: A population-level tool for incidence estimation

Montoya, V
Olmstead, AD
Janjua, NZ
Tang, P
Grebely, J
Cook, D
Richard Harrigan, P
Krajden, M

June 2015

The ability to classify acute versus chronic hepatitis C virus (HCV) infections at the time of diagn...

Hepatitis C Virus Transmission Bottlenecks Analyzed by Deep Sequencing

Wang, G. P.
Sherrill-Mix, S. A.
Chang, K. M.
Quince, C.
Bushman, F. D.

January 2010

Hepatitis C virus (HCV) replication in infected patients produces large and diverse viral population...

Comparison of next generation sequencing technologies for the comprehensive assessment of full-length hepatitis C viral genomes.

Thomson, E
Ip, C
Badhan, A
Christiansen, M
Adamson, W
Ansari, M
Bibby, D
Breuer, J
Brown, A
Bowden, R
Bryant, J
Bonsall, D
Da Silva Filipe, A
Hinds, C
Hudson, E
Klenerman, P
Lythgow, K
Mbisa, J
McLauchlan, J
Myers, R
Piazza, P
Roy, S
Trebes, A
Vattipally, S
Witteveldt, J
STOP-HCV consortium
Barnes, E
Simmonds, P

January 2016

Affordable next generation sequencing (NGS) technologies for hepatitis C virus (HCV) may potentially...

Comparison of next-generation sequencing technologies for comprehensive assessment of full-length hepatitis C viral genomes

Thomson, E
Ip, C
Badhan, A
Christiansen, M
Adamson, W
Ansari, M
Bibby, D
Breuer, J
Brown, A
Bowden, R
Bryant, J
Bonsall, D
Da Silva Filipe, A
Hinds, C
Hudson, E
Klenerman, P
Lythgow, K
Mbisa, J
McLauchlan, J
Myers, R
Piazza, P
Roy, S
Trebes, A
Sreenu, V
Witteveldt, J
Barnes, E
Simmonds, P

January 2016

Affordable next-generation sequencing (NGS) technologies for hepatitis C virus (HCV) may potentially...

Ultra-deep sequencing and bioinformatics approach to detect natural resistance-associated variants in DAA-naïve HCV positive patients

Marascio, Nadia
Pavia, Grazia
Strazzulla, Alessio
Dierckx, Tim
Cuypers, Lize
Vrancken, Bram
Barreca, Giorgio Settimo
Mirante, Teresa
Malanga, Donatella
Viglietto, Giuseppe
Vandamme, Anne-Mieke
Torti, Carlo
Liberto, Maria Carla
Focà, Alfredo

May 2016

Background: Resistance-associated variants (RAVs) emerge in HCV viral quasispecies at low frequency,...

Hepatitis C virus transmission bottlenecks analyzed by deep sequencing

Gary P. Wang
Scott A. Sherrill-mix
Kyong-mi Chang
Chris Quince
Frederic D. Bushman

January 2010

Hepatitis C virus (HCV) replication in infected patients produces large and diverse viral population...

Primer ID ultra-deep sequencing reveals dynamics of drug resistance-associated variants in breakthrough hepatitis C viruses: Relevance to treatment outcome and resistance screening

Barnard, R.
Chopra, A.
James, I.
Blinco, J.
Watson, M.W.
Jabara, C.B.
Hazuda, D.
Lemon, S.M.
Mallal, S.
Gaudieri, S.

January 2016

Background: Use of direct-acting antiviral drugs (DAAs) that target the Hepatitis C virus may be ham...

A method for near full-length amplification and sequencing for six hepatitis C virus genotypes

Bull, RA
Eltahla, AA
Rodrigo, C
Koekkoek, SM
Walker, M
Pirozyan, MR
Betz-Stablein, B
Toepfer, A
Laird, M
Oh, S
Heiner, C
Maher, L
Schinkel, J
Lloyd, AR
Luciani, F

March 2016

Background: Hepatitis C virus (HCV) is a rapidly evolving RNA virus that has been classified into se...

Comparison of next generation sequencing technologies for the comprehensive assessment of full-length hepatitis C viral genomes

Ip, CLC
Ansari, MA
Brown, A
Bowden, R
Bonsall, D
Hudson, E
Klenerman, P
Piazza, P
Trebes, A
Barnes, E
Simmonds, P
STOP-HCV Consortium

July 2016

Affordable next generation sequencing (NGS) technologies for hepatitis C virus (HCV) may potentially...

High-resolution hepatitis C virus subtyping using NS5B deep sequencing and phylogeny, an alternative to current methods.

Quer, Josep
Gregori, Josep
Rodríguez-Frias, Francisco
Buti, Maria
Madejon, Antonio
Perez-del-Pulgar, Sofia
Garcia-Cehic, Damir
Casillas, Rosario
Blasi, Maria
Homs, Maria
Tabernero, David
Alvarez-Tejado, Miguel
Muñoz, Jose Manuel
Cubero, Maria
Caballero, Andrea
del Campo, Jose Antonio
Domingo, Esteban
Belmonte, Irene
Nieto, Leonardo
Lens, Sabela
Muñoz-de-Rueda, Paloma
Sanz-Cameno, Paloma
Sauleda, Silvia
Bes, Marta
Gomez, Jordi
Briones, Carlos
Perales, Celia
Sheldon, Julie
Castells, Lluis
Viladomiu, Lluis
Salmeron, Javier
Ruiz-Extremera, Angela
Quiles-Pérez, Rosa
Moreno-Otero, Ricardo
López-Rodríguez, Rosario
Allende, Helena
Romero-Gómez, Manuel
Guardia, Jaume
Esteban, Rafael
Garcia-Samaniego, Javier
Forns, Xavier
Esteban, Juan Ignacio

January 2015

Journal Article; Research Support, Non-U.S. Gov't; Corrección...

ve-SEQ: Robust, unbiased enrichment for streamlined detection and whole-genome sequencing of HCV and other highly diverse pathogens

Bowden, R
Bonsall, D
Ansari, M
Ip, C
Trebes, A
Brown, A
Klenerman, P
Buck, D
Piazza, P
Barnes, E

January 2015

The routine availability of high-depth virus sequence data would allow the sensitive detection of re...

Multitypic hepatitis C virus infection identified by real-time nucleotide sequencing of minority genotypes

Buckton, Andrew J
Ngui, Siew-Lin
Arnold, Catherine
Boast, Katie
Kovacs, Joanne
Klapper, Paul E
Patel, Bharat
Ibrahim, Imad
Rangarajan, Savita
Ramsay, Mary E
Teo, Chong-Gee

August 2006

The prevalence of concurrent multitypic hepatitis C virus (HCV) infection is uncertain. A sensitive ...

ve-SEQ: Robust, unbiased enrichment for streamlined detection and whole-genome sequencing of HCV and other highly diverse pathogens [version 1; referees: 2 approved]

David Bonsall
M. Azim Ansari
Camilla Ip
Amy Trebes
Anthony Brown
Paul Klenerman
David Buck
STOP-HCV Consortium
Paolo Piazza
Eleanor Barnes
Rory Bowden

October 2015

The routine availability of high-depth virus sequence data would allow the sensitive detection of re...

Accurate identification of HCV sequence variants using deep sequencing with a primer ID

Abstract

Extracted data

Topics

Accurate identification of HCV sequence variants using deep sequencing with a primer ID

Abstract

Extracted data

Topics

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