In this paper, we propose a new method to identify biochemical reaction networks (i.e. both reactions and kinetic parameters) from heterogeneous datasets. Such datasets can contain (a) data from several replicates of an experiment performed on a biological system; (b) data measured from a biochemical network subjected to different experimental conditions, for example, changes/perturbations in biological inductions, temperature, gene knock-out, gene over-expression, etc. Simultaneous integration of various datasets to perform system identification has the potential to avoid non-identifiability issues typically arising when only single datasets are used
peer reviewedFor the purpose of precise mathematical modelling of chemical reaction networks, useful...
In this work, we investigate some theoretical aspects related to the estimation approach proposed by...
A fundamental step in systems biology is the estimation of kinetic parameters, such as association a...
Abstract — In this paper, we propose a new method to identify biochemical reaction networks (i.e. bo...
International audienceInference of biochemical network models from experimental data is a crucial pr...
Kondofersky I, Theis FJ, Fuchs C. Inferring catalysis in biological systems. IET Systems Biology. 20...
The modelling of chemical and biochemical systems is highly dependent on the reaction network of the...
peer reviewedIn this paper we consider the question of parameter identifiability for biochemical rea...
International audienceIn this paper we investigate how randomness in biochemical network dynamics im...
In silico models for biochemical systems are usually built by extracting in vitro kinetic expression...
© The Institution of Engineering and Technology.In systems biology, one is often interested in ...
In this paper we consider the question of parameter identifiability for biochemical reaction networ...
Dynamic models present a fundamental tool in systems biology, but rely on kinetic parameters, such a...
Dynamic models present a fundamental tool in systems biology, but rely on kinetic parameters, such a...
A biochemical reaction network is the system in which biochemical species interact through various r...
peer reviewedFor the purpose of precise mathematical modelling of chemical reaction networks, useful...
In this work, we investigate some theoretical aspects related to the estimation approach proposed by...
A fundamental step in systems biology is the estimation of kinetic parameters, such as association a...
Abstract — In this paper, we propose a new method to identify biochemical reaction networks (i.e. bo...
International audienceInference of biochemical network models from experimental data is a crucial pr...
Kondofersky I, Theis FJ, Fuchs C. Inferring catalysis in biological systems. IET Systems Biology. 20...
The modelling of chemical and biochemical systems is highly dependent on the reaction network of the...
peer reviewedIn this paper we consider the question of parameter identifiability for biochemical rea...
International audienceIn this paper we investigate how randomness in biochemical network dynamics im...
In silico models for biochemical systems are usually built by extracting in vitro kinetic expression...
© The Institution of Engineering and Technology.In systems biology, one is often interested in ...
In this paper we consider the question of parameter identifiability for biochemical reaction networ...
Dynamic models present a fundamental tool in systems biology, but rely on kinetic parameters, such a...
Dynamic models present a fundamental tool in systems biology, but rely on kinetic parameters, such a...
A biochemical reaction network is the system in which biochemical species interact through various r...
peer reviewedFor the purpose of precise mathematical modelling of chemical reaction networks, useful...
In this work, we investigate some theoretical aspects related to the estimation approach proposed by...
A fundamental step in systems biology is the estimation of kinetic parameters, such as association a...