The accurate analysis of biological networks, enabled by the precise capture of their individual components, can reveal important underlying biological principles. Efficient image processing techniques are required to precisely identify and quantify the networks from complex images. In this paper, we present a novel approach for a weighted and undirected graph-based network reconstruction and quantification from 2D images using an adaptive rectangular mesh refinement approach. The proposed approach is able to efficiently identify the organizational principles of the network, capturing the underlying network structure, and computing relevant network topological properties. We validate the proposed approach by comparing it with the state-of-t...
peer reviewedBackground: Complexity is a key problem when visualizing biological networks; as the nu...
BackgroundBiological networks are widely used to represent processes in biological systems and to ca...
BACKGROUND: Optical slice microscopy is commonly used to observe cellular morphology in 3D tissue cu...
Background: The analysis of complex networks both in general and in particular as pertaining to real...
We propose, under the form of a short overview, to stress the interest of graph to encode the "topol...
We will consider the three phases of the procedure and approach the methodological issues of interes...
One of the major goals in biomedical image processing is accurate segmentation of networks embedded ...
With the ever-increasing quality and quantity of imaging data in biomedical research comes the deman...
One of the major goals in biomedical image processing is accurate segmentation of networks embedded ...
Summary: Automated analysis of imaged phenotypes enables fast and reproducible quantification of bio...
In this letter, we consider scenes constituted by underlying structural networks. This is an importa...
Thesis (Ph.D.)--University of Washington, 2016-12Biomedical research increasingly relies on the anal...
The visualization and analysis of biological systems and data as networks has become a hallmark of m...
The visualization of biological networks is critically important to aid researchers in understanding...
Biological networks reconstruction is a crucial step towards the functional characterization and elu...
peer reviewedBackground: Complexity is a key problem when visualizing biological networks; as the nu...
BackgroundBiological networks are widely used to represent processes in biological systems and to ca...
BACKGROUND: Optical slice microscopy is commonly used to observe cellular morphology in 3D tissue cu...
Background: The analysis of complex networks both in general and in particular as pertaining to real...
We propose, under the form of a short overview, to stress the interest of graph to encode the "topol...
We will consider the three phases of the procedure and approach the methodological issues of interes...
One of the major goals in biomedical image processing is accurate segmentation of networks embedded ...
With the ever-increasing quality and quantity of imaging data in biomedical research comes the deman...
One of the major goals in biomedical image processing is accurate segmentation of networks embedded ...
Summary: Automated analysis of imaged phenotypes enables fast and reproducible quantification of bio...
In this letter, we consider scenes constituted by underlying structural networks. This is an importa...
Thesis (Ph.D.)--University of Washington, 2016-12Biomedical research increasingly relies on the anal...
The visualization and analysis of biological systems and data as networks has become a hallmark of m...
The visualization of biological networks is critically important to aid researchers in understanding...
Biological networks reconstruction is a crucial step towards the functional characterization and elu...
peer reviewedBackground: Complexity is a key problem when visualizing biological networks; as the nu...
BackgroundBiological networks are widely used to represent processes in biological systems and to ca...
BACKGROUND: Optical slice microscopy is commonly used to observe cellular morphology in 3D tissue cu...