Data Exchange Format for Biological Pathway Databases (BioPAX) Workshop - Final Technical Report

In June 2003, the Department of Energy (DOE) allocated funds in support of the development of A Data Exchange Format for Biological Pathway Databases (BioPAX). The primary objective of the BioPAX initiative (http://www.biopax.org) is the development of a single, consensus-based standard for a data exchange format for biological pathway databases that can be widely adopted in a timely manner as a strategy for the interchange of biological pathway data in the life science community. BioPAX Level 1, Version 1.0, released July 2004, supports metabolic pathway data and is initially supported by the BioCyc and WIT databases. This work was developed during community led workshops that were significantly funded by this grant. Subsequent releases of BioPAX will add support for protein-protein interactions, signal transduction pathways, genetic interactions, and other pathway data types