We present a novel method to measure saliency in molecular dynamics simulation data. This saliency measure is based on a multiscale center-surround mechanism, which is fast and efficient to compute. We explore the use of the saliency function to guide the selection of representative and anomalous timesteps for summarization of simulations. To this end, we also introduce a multiscale keyframe selection procedure which automatically provides keyframes representing the simulation at varying levels of coarseness. We compare our saliency guided keyframe approach against other methods, and show that it consistently selects superior keyframes as measured by their predictive power in reconstructing the simulation
Machine learning (ML) has emerged as a pervasive tool in science, engineering, and beyond. Its succe...
We have recently developed a scalable algorithm for ordering the instantaneous observations of a dyn...
© the Partner Organisations 2014. With advances in computational power, the rapidly growing role of ...
Recent advances in sophisticated computational techniques have facilitated simulation of incrediblyd...
In this dissertation, we show how we can use principles of saliency to enhance depiction, manage vis...
We present sMolBoxes, a dataflow representation for the exploration and analysis of long molecular d...
In this thesis we present an exploration system tailored for very large molecular simulations which ...
The research on molecular dynamics produces thousands of datasets pertaining the behavior of molecul...
Data mining techniques depend strongly on how the data are represented and how distance between samp...
Many recently introduced enhanced sampling techniques are based on biasing coarse descriptors (colle...
Thesis (S.M.)--Massachusetts Institute of Technology, Dept. of Electrical Engineering and Computer S...
This dissertation presents three research projects on novel methods in computational bio- physics. E...
To decipher the biomolecular interaction mechanism play an important role in understanding the myste...
Data mining techniques depend strongly on how the data are represented and how distance between samp...
International audienceCombining molecular dynamics simulations with user interaction would have vari...
Machine learning (ML) has emerged as a pervasive tool in science, engineering, and beyond. Its succe...
We have recently developed a scalable algorithm for ordering the instantaneous observations of a dyn...
© the Partner Organisations 2014. With advances in computational power, the rapidly growing role of ...
Recent advances in sophisticated computational techniques have facilitated simulation of incrediblyd...
In this dissertation, we show how we can use principles of saliency to enhance depiction, manage vis...
We present sMolBoxes, a dataflow representation for the exploration and analysis of long molecular d...
In this thesis we present an exploration system tailored for very large molecular simulations which ...
The research on molecular dynamics produces thousands of datasets pertaining the behavior of molecul...
Data mining techniques depend strongly on how the data are represented and how distance between samp...
Many recently introduced enhanced sampling techniques are based on biasing coarse descriptors (colle...
Thesis (S.M.)--Massachusetts Institute of Technology, Dept. of Electrical Engineering and Computer S...
This dissertation presents three research projects on novel methods in computational bio- physics. E...
To decipher the biomolecular interaction mechanism play an important role in understanding the myste...
Data mining techniques depend strongly on how the data are represented and how distance between samp...
International audienceCombining molecular dynamics simulations with user interaction would have vari...
Machine learning (ML) has emerged as a pervasive tool in science, engineering, and beyond. Its succe...
We have recently developed a scalable algorithm for ordering the instantaneous observations of a dyn...
© the Partner Organisations 2014. With advances in computational power, the rapidly growing role of ...