The use of hybrid ab initio QM/MM methods in studies of metalloenzymes and related systems presents a major challenge to computational chemists. Methods that include the metal ion in the quantum mechanical region should also include the ligands of the metal in this region. Such a treatment, however, should be very demanding if one is interested in performing the configurational averaging needed for proper calculations of activation free energies. In the present work we examine the ability of the frozen DFT (FDFT) and the constrained DFT (CDFT) approaches to be used in ab initio studies of metal-catalyzed reactions, while allowing for an effective QM (rather than a QM/MM) treatment of the reacting complex. These approaches allow one to treat...
UnrestrictedModeling chemical reactions in condensed phases, especially in biological environment, s...
The electronic structure of molecular systems containing transition metal atoms is traditionally stu...
Molecular dynamics (MD) is a powerful tool to study atomic scale changes in proteins underpinning bi...
Enzymes are complex biomolecules capable of performing unique catalysis under physiological conditio...
Enzymes are complex biomolecules capable of performing unique catalysis under physiological conditio...
Combined ab initio/empirical forcefield molecular dynamics (QM/MM) simulations are considered to be ...
Combined ab initio/empirical forcefield molecular dynamics (QM/MM) simulations are considered to be ...
Enzymes are complex biomolecules capable of performing unique catalysis under physiological conditio...
Although DFT is the unrivaled method of choice for quantum chemical studies of bioinorganic problems...
Electron transfer (ET) reactions are one of the most important processes in chemistry and biology. B...
Determining the free energies and mechanisms of chemical reactions in solution and enzymes is a majo...
We report the development of a quantum mechanics/molecular mechanics free energy perturbation (QM/MM...
Natural metalloenzymes are often the most proficient catalysts in terms of their activity, selectivi...
The past decades have seen an explosive growth in the application of density functional theory (DFT)...
The simulations of oligopeptide hydrolysis by the matrix metalloproteinase MMP-2 using the density f...
UnrestrictedModeling chemical reactions in condensed phases, especially in biological environment, s...
The electronic structure of molecular systems containing transition metal atoms is traditionally stu...
Molecular dynamics (MD) is a powerful tool to study atomic scale changes in proteins underpinning bi...
Enzymes are complex biomolecules capable of performing unique catalysis under physiological conditio...
Enzymes are complex biomolecules capable of performing unique catalysis under physiological conditio...
Combined ab initio/empirical forcefield molecular dynamics (QM/MM) simulations are considered to be ...
Combined ab initio/empirical forcefield molecular dynamics (QM/MM) simulations are considered to be ...
Enzymes are complex biomolecules capable of performing unique catalysis under physiological conditio...
Although DFT is the unrivaled method of choice for quantum chemical studies of bioinorganic problems...
Electron transfer (ET) reactions are one of the most important processes in chemistry and biology. B...
Determining the free energies and mechanisms of chemical reactions in solution and enzymes is a majo...
We report the development of a quantum mechanics/molecular mechanics free energy perturbation (QM/MM...
Natural metalloenzymes are often the most proficient catalysts in terms of their activity, selectivi...
The past decades have seen an explosive growth in the application of density functional theory (DFT)...
The simulations of oligopeptide hydrolysis by the matrix metalloproteinase MMP-2 using the density f...
UnrestrictedModeling chemical reactions in condensed phases, especially in biological environment, s...
The electronic structure of molecular systems containing transition metal atoms is traditionally stu...
Molecular dynamics (MD) is a powerful tool to study atomic scale changes in proteins underpinning bi...