Average running time and memory used for 9 100 genome samples into SARS2-100k reference tree.</p
a RT-PCR cycle thresholds predicting SARS-CoV-2 sequence read quality. Comparison of RT-PCR cycle th...
<p>Time comparison among different software for densest genomic models tested in the study.</p
To evaluate the accuracy of lineage abundance estimates from amplicon-based and whole genome-based s...
Tests were run on a server with 32 Intel Xeon Gold 6242 CPU cores for 10 repeated runs. TIPars took ...
Tests were run 100 times using FastTree2 (double-precision version) on a server with eight Intel Xeo...
<p>Memory usage is depicted as a function of genome size when setting the sample size to 50, and is ...
We estimated the run time and peak memory usage for the two preprocessing steps by TIPars. The first...
<p>Computational time is depicted as a function of genome size when setting the sample size to 50, a...
<p>The memory usage for all tools is based on a single overlap threshold or <i>k-mer</i> and is eval...
The statistic is the accuracy of the PANGO lineages for twenty sets of 100, 1000, 5000 and 10000 nov...
Time is reported in minutes (min), and peak memory usage is reported in Gigabytes (Gb). Running time...
Memory remains constant as sample size increases, and runtime in most methods (other than Kraken2/Br...
<p>The memory usage for all tools is based on a single overlap threshold or <i>k-mer</i> and is eval...
<p>Average genome size and average genomic C+G content in different kingdoms and subkingdoms.</p
• Assemble a human genome in approx. 1 hr. The standard benchmark human set is 6 billion pair reads ...
a RT-PCR cycle thresholds predicting SARS-CoV-2 sequence read quality. Comparison of RT-PCR cycle th...
<p>Time comparison among different software for densest genomic models tested in the study.</p
To evaluate the accuracy of lineage abundance estimates from amplicon-based and whole genome-based s...
Tests were run on a server with 32 Intel Xeon Gold 6242 CPU cores for 10 repeated runs. TIPars took ...
Tests were run 100 times using FastTree2 (double-precision version) on a server with eight Intel Xeo...
<p>Memory usage is depicted as a function of genome size when setting the sample size to 50, and is ...
We estimated the run time and peak memory usage for the two preprocessing steps by TIPars. The first...
<p>Computational time is depicted as a function of genome size when setting the sample size to 50, a...
<p>The memory usage for all tools is based on a single overlap threshold or <i>k-mer</i> and is eval...
The statistic is the accuracy of the PANGO lineages for twenty sets of 100, 1000, 5000 and 10000 nov...
Time is reported in minutes (min), and peak memory usage is reported in Gigabytes (Gb). Running time...
Memory remains constant as sample size increases, and runtime in most methods (other than Kraken2/Br...
<p>The memory usage for all tools is based on a single overlap threshold or <i>k-mer</i> and is eval...
<p>Average genome size and average genomic C+G content in different kingdoms and subkingdoms.</p
• Assemble a human genome in approx. 1 hr. The standard benchmark human set is 6 billion pair reads ...
a RT-PCR cycle thresholds predicting SARS-CoV-2 sequence read quality. Comparison of RT-PCR cycle th...
<p>Time comparison among different software for densest genomic models tested in the study.</p
To evaluate the accuracy of lineage abundance estimates from amplicon-based and whole genome-based s...
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