Nuclear and chloroplastic SNP markers for genetic studies of timber origin for Hymenaea trees
- Chaves, Camila L.
- Blanc-Jolivet, Celine
- Sebbenn, Alexandre M.
- Mader, Malte
- Meyer-Sand, Barbara R.V.
- Paredes-Villanueva, Kathelyn
- Honorio Coronado, Euridice N.
- Garcia-Davila, Carmen
- Tysklind, Niklas
- Troispoux, Valerie
- Massot, Marie
- Degen, Bernd
Publication date
September 2019
DOIAbstract
We developed nuclear and chloroplastic single nucleotide polymorphism (SNP) and INDEL (insertion/deletion) markers using restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing to set up a genetic tracking method of the geographical origin of Hymenaea sp. From two initial sets of 358 and 32 loci used to genotype at least 94 individuals, a final set of 75 nSNPs, 50 cpSNPs and 6 INDELs identifying significant population structure was developed.</p
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