We present a GPU accelerated toolbox for shaping the light propagation through multimode fibre using a spatial light modulator (SLM). The light is modulated before being coupled to the proximal end of the fibre in order to achieve arbitrary light patterns at the distal end of the fibre. First, the toolbox optimises the acquisition time of the transformation matrix of the fibre by synchronous operation of CCD and SLM. Second, it uses the acquired transformation matrix retained within the GPU memory to design, in real-time, the desired holographic mask for on-the-fly modulation of the output light field. We demonstrate the functionality of the toolbox by acquiring the transformation matrix at the maximum refresh rate of the SLM -204Hz, and us...