Isolating Greater Cane Rat Populations <i>(Thryonomys swinderianus</i>) from Eastern Arc Mountains, Tanzania: Linking Diversity to Morphometric and Molecular Characteristics

Evolutionary information on the greater cane rat (Thryonomys swinderianus) in the Eastern and Southern African regions is scarce, making population management and conservation of the species challenging. We studied T. swinderianus populations from two spatially isolated Eastern Arc Mountains in Tanzania to link molecular and geometric–morphological evidence to characterize these populations’ diversity. Fecal samples (n = 50) and skulls (n = 99) of T. swinderianus were collected from Udzungwa (north and south) and Uluguru mountains (urban and rural sites) and analyzed using molecular and geomorphometry techniques. Molecular analysis grouped the population into three distinct clades based on the location where the samples were collected, while the morphometric method was not able to distinctively separate the populations. Both methods revealed that the population obeyed the isolation by distance model with higher genetic distance between the Udzungwa and Uluguru populations and lower distance between Uluguru urban and rural populations. Both Mahalanobis and Procrustes distances in skull landmarks between the Udzungwa and Uluguru populations were significantly higher across the dorsal, ventral, and lateral views of the skulls, suggesting strongly that molecular and morphometric methods applied together can be useful in characterizing the population traits of the least known species. Our study suggests genetic and morphometric methods could complement each other in understanding the evolutionary biology and within-species diversity of vertebrate species that do not exhibit strong intra-species differentiation