Gene categories negatively enriched (FDR q <0.1) in GSEA analysis of the PENO-TLOβ2 complemented mutant versus the tlo null mutant (CC16) in YEPD during exponential growth.

Classification of genes downregulated in E18.5 vs. E16.5 PLECs (FC≤-2, p<0.05, FDR q<0.25).

Timothy A. Norman Jr. (6694004)
Adam C. Gower (190001)
Felicia Chen (6694007)
Alan Fine (456361)

May 2019

Classification of genes downregulated in E18.5 vs. E16.5 PLECs (FC≤-2, p<0.05, FDR q<0.25).</p

Differentially enriched Gene Ontology biological processes among all target genes segmented by low and high hazard of ovarian cancer death or recurrence identified by set enrichment analyses.

Kristin R. Delfino (388573)
Sandra L. Rodriguez-Zas (19332)

March 2013

1− hazard genes: number of genes that have a negative association between the hazard of ovarian c...

Differential expression of genes in the cell cycle pathway.

Russell J. Butterfield (4688206)
Diane M. Dunn (100892)
Ying Hu (14950)
Kory Johnson (814455)
Carsten G. Bönnemann (4688209)
Robert B. Weiss (100894)

December 2017

Differential expression of genes in the cell cycle pathway (hsa04110, upper panel) and DNA replic...

Gene categories negatively enriched (FDR q <0.1) in GSEA analysis of the PENO-TLOα1 complemented mutant versus the tlo null mutant (CC16) in YEPD during exponential growth.

Jessica Fletcher (3414134)
James O’Connor-Moneley (17549781)
Dean Frawley (6476027)
Peter R. Flanagan (5540714)
Leenah Alaalm (11344965)
Pilar Menendez-Manjon (17549784)
Samuel Vega Estevez (17549787)
Shane Hendricks (17549790)
Andrew L. Woodruff (4592194)
Alessia Buscaino (185625)
Matthew Z. Anderson (7512680)
Derek J. Sullivan (17549793)
Gary P. Moran (12859629)

December 2023

Gene categories negatively enriched (FDR q PENO-TLOα1 complemented mutant versus the tlo null mutant...

Gene categories positively enriched (FDR q <0.1) in GSEA analysis of the PENO-TLOβ2 complemented mutant versus the tlo null mutant (CC16) in YEPD during exponential growth.

Jessica Fletcher (3414134)
James O’Connor-Moneley (17549781)
Dean Frawley (6476027)
Peter R. Flanagan (5540714)
Leenah Alaalm (11344965)
Pilar Menendez-Manjon (17549784)
Samuel Vega Estevez (17549787)
Shane Hendricks (17549790)
Andrew L. Woodruff (4592194)
Alessia Buscaino (185625)
Matthew Z. Anderson (7512680)
Derek J. Sullivan (17549793)
Gary P. Moran (12859629)

December 2023

Gene categories positively enriched (FDR q PENO-TLOβ2 complemented mutant versus the tlo null mutant...

Gene categories positively enriched (FDR q <0.1) in GSEA analysis of the PENO-TLOα1 complemented mutant versus the tlo null mutant (CC16) in YEPD during exponential growth.

Jessica Fletcher (3414134)
James O’Connor-Moneley (17549781)
Dean Frawley (6476027)
Peter R. Flanagan (5540714)
Leenah Alaalm (11344965)
Pilar Menendez-Manjon (17549784)
Samuel Vega Estevez (17549787)
Shane Hendricks (17549790)
Andrew L. Woodruff (4592194)
Alessia Buscaino (185625)
Matthew Z. Anderson (7512680)
Derek J. Sullivan (17549793)
Gary P. Moran (12859629)

December 2023

Gene categories positively enriched (FDR q PENO-TLOα1 complemented mutant versus the tlo null mutant...

Genes differentially expressed (FDR q <0.05, FC > 2.0) between PENO-TLOγ11 complemented mutant and tlo null mutant (CC16) in YEPD during exponential growth.

Jessica Fletcher (3414134)
James O’Connor-Moneley (17549781)
Dean Frawley (6476027)
Peter R. Flanagan (5540714)
Leenah Alaalm (11344965)
Pilar Menendez-Manjon (17549784)
Samuel Vega Estevez (17549787)
Shane Hendricks (17549790)
Andrew L. Woodruff (4592194)
Alessia Buscaino (185625)
Matthew Z. Anderson (7512680)
Derek J. Sullivan (17549793)
Gary P. Moran (12859629)

December 2023

Genes differentially expressed (FDR q 2.0) between PENO-TLOγ11 complemented mutant and tlo null mut...

Genes differentially expressed (FDR q <0.05, FC > 2.0) between PENO-TLOα1 complemented mutant and tlo null mutant (CC16) in YEPD during exponential growth.

Jessica Fletcher (3414134)
James O’Connor-Moneley (17549781)
Dean Frawley (6476027)
Peter R. Flanagan (5540714)
Leenah Alaalm (11344965)
Pilar Menendez-Manjon (17549784)
Samuel Vega Estevez (17549787)
Shane Hendricks (17549790)
Andrew L. Woodruff (4592194)
Alessia Buscaino (185625)
Matthew Z. Anderson (7512680)
Derek J. Sullivan (17549793)
Gary P. Moran (12859629)

December 2023

Genes differentially expressed (FDR q 2.0) between PENO-TLOα1 complemented mutant and tlo null muta...

Gene differentially expressed (FDR q <0.05, FC > 2.0) between PENO-TLOβ2 complemented mutant and tlo null mutant (CC16) in YEPD during exponential growth.

Jessica Fletcher (3414134)
James O’Connor-Moneley (17549781)
Dean Frawley (6476027)
Peter R. Flanagan (5540714)
Leenah Alaalm (11344965)
Pilar Menendez-Manjon (17549784)
Samuel Vega Estevez (17549787)
Shane Hendricks (17549790)
Andrew L. Woodruff (4592194)
Alessia Buscaino (185625)
Matthew Z. Anderson (7512680)
Derek J. Sullivan (17549793)
Gary P. Moran (12859629)

December 2023

Gene differentially expressed (FDR q 2.0) between PENO-TLOβ2 complemented mutant and tlo null mutan...

Genes differentially expressed (FDR q <0.05, FC > 2.0) between MAY1244 and tlo null mutant (CC16) in YEPD during exponential growth.

Jessica Fletcher (3414134)
James O’Connor-Moneley (17549781)
Dean Frawley (6476027)
Peter R. Flanagan (5540714)
Leenah Alaalm (11344965)
Pilar Menendez-Manjon (17549784)
Samuel Vega Estevez (17549787)
Shane Hendricks (17549790)
Andrew L. Woodruff (4592194)
Alessia Buscaino (185625)
Matthew Z. Anderson (7512680)
Derek J. Sullivan (17549793)
Gary P. Moran (12859629)

December 2023

Genes differentially expressed (FDR q 2.0) between MAY1244 and tlo null mutant (CC16) in YEPD durin...

Gene expression in PENO-TLO complemented strains.

Jessica Fletcher (3414134)
James O’Connor-Moneley (17549781)
Dean Frawley (6476027)
Peter R. Flanagan (5540714)
Leenah Alaalm (11344965)
Pilar Menendez-Manjon (17549784)
Samuel Vega Estevez (17549787)
Shane Hendricks (17549790)
Andrew L. Woodruff (4592194)
Alessia Buscaino (185625)
Matthew Z. Anderson (7512680)
Derek J. Sullivan (17549793)
Gary P. Moran (12859629)

December 2023

(A) Volcano plots with spots representing genes with 2-fold or more change in gene expression (blue ...

Differential expression and mutant fitness are poorly correlated.

Keith H. Turner (255854)
Jake Everett (603556)
Urvish Trivedi (603557)
Kendra P. Rumbaugh (141073)
Marvin Whiteley (225919)

July 2014

1Spearman rank correlation coefficient between fold change expression and fold change mutant abun...

Mutation enrichment per gene in WES data from 107 G1 rescues.

Kärt Tomberg (3181536)
Randal J. Westrick (3181542)
Emilee N. Kotnik (5724692)
Audrey C. Cleuren (5724695)
David R Siemieniak (5724698)
Guojing Zhu (5724701)
Thomas L. Saunders (235029)
David Ginsburg (402494)

September 2018

All genes with potentially deleterious ENU mutations are sorted by their chromosomal position on the...

Analysis of the functional gene set enrichment after 24 h ZEA treatment by GSEA.

Mei Yu So (558992)
ZhiPeng Tian (558993)
Yong Shian Phoon (558994)
Sha Sha (558995)
Michael N. Antoniou (558996)
JiangWen Zhang (5658922)
Rudolf S. S. Wu (131466)
Kian C Tan-Un (558997)

May 2014

Differential gene expression was ranked by fold change. The most up-regulated genes are shown on ...

Gene set enrichment analysis (GSEA) of genes under negative regulation by NF90/NF110.

Ting-Hsuan Wu (5028911)
Lingfang Shi (74325)
Jessika Adrian (527358)
Minyi Shi (179103)
Ramesh V. Nair (5028914)
Michael P. Snyder (179108)
Peter N. Kao (74331)

March 2018

Gene set enrichment analysis (GSEA) of genes under negative regulation by NF90/NF110.</p

Classification of genes downregulated in E18.5 vs. E16.5 PLECs (FC≤-2, p<0.05, FDR q<0.25).

Timothy A. Norman Jr. (6694004)
Adam C. Gower (190001)
Felicia Chen (6694007)
Alan Fine (456361)

May 2019

Classification of genes downregulated in E18.5 vs. E16.5 PLECs (FC≤-2, p<0.05, FDR q<0.25).</p

Differentially enriched Gene Ontology biological processes among all target genes segmented by low and high hazard of ovarian cancer death or recurrence identified by set enrichment analyses.

Kristin R. Delfino (388573)
Sandra L. Rodriguez-Zas (19332)

March 2013

1− hazard genes: number of genes that have a negative association between the hazard of ovarian c...

Differential expression of genes in the cell cycle pathway.

Russell J. Butterfield (4688206)
Diane M. Dunn (100892)
Ying Hu (14950)
Kory Johnson (814455)
Carsten G. Bönnemann (4688209)
Robert B. Weiss (100894)

December 2017

Differential expression of genes in the cell cycle pathway (hsa04110, upper panel) and DNA replic...

Gene categories negatively enriched (FDR q <0.1) in GSEA analysis of the PENO-TLOα1 complemented mutant versus the tlo null mutant (CC16) in YEPD during exponential growth.

Jessica Fletcher (3414134)
James O’Connor-Moneley (17549781)
Dean Frawley (6476027)
Peter R. Flanagan (5540714)
Leenah Alaalm (11344965)
Pilar Menendez-Manjon (17549784)
Samuel Vega Estevez (17549787)
Shane Hendricks (17549790)
Andrew L. Woodruff (4592194)
Alessia Buscaino (185625)
Matthew Z. Anderson (7512680)
Derek J. Sullivan (17549793)
Gary P. Moran (12859629)

December 2023

Gene categories negatively enriched (FDR q PENO-TLOα1 complemented mutant versus the tlo null mutant...

Gene categories positively enriched (FDR q <0.1) in GSEA analysis of the PENO-TLOβ2 complemented mutant versus the tlo null mutant (CC16) in YEPD during exponential growth.

Jessica Fletcher (3414134)
James O’Connor-Moneley (17549781)
Dean Frawley (6476027)
Peter R. Flanagan (5540714)
Leenah Alaalm (11344965)
Pilar Menendez-Manjon (17549784)
Samuel Vega Estevez (17549787)
Shane Hendricks (17549790)
Andrew L. Woodruff (4592194)
Alessia Buscaino (185625)
Matthew Z. Anderson (7512680)
Derek J. Sullivan (17549793)
Gary P. Moran (12859629)

December 2023

Gene categories positively enriched (FDR q PENO-TLOβ2 complemented mutant versus the tlo null mutant...

Gene categories positively enriched (FDR q <0.1) in GSEA analysis of the PENO-TLOα1 complemented mutant versus the tlo null mutant (CC16) in YEPD during exponential growth.

Jessica Fletcher (3414134)
James O’Connor-Moneley (17549781)
Dean Frawley (6476027)
Peter R. Flanagan (5540714)
Leenah Alaalm (11344965)
Pilar Menendez-Manjon (17549784)
Samuel Vega Estevez (17549787)
Shane Hendricks (17549790)
Andrew L. Woodruff (4592194)
Alessia Buscaino (185625)
Matthew Z. Anderson (7512680)
Derek J. Sullivan (17549793)
Gary P. Moran (12859629)

December 2023

Gene categories positively enriched (FDR q PENO-TLOα1 complemented mutant versus the tlo null mutant...

Genes differentially expressed (FDR q <0.05, FC > 2.0) between PENO-TLOγ11 complemented mutant and tlo null mutant (CC16) in YEPD during exponential growth.

Jessica Fletcher (3414134)
James O’Connor-Moneley (17549781)
Dean Frawley (6476027)
Peter R. Flanagan (5540714)
Leenah Alaalm (11344965)
Pilar Menendez-Manjon (17549784)
Samuel Vega Estevez (17549787)
Shane Hendricks (17549790)
Andrew L. Woodruff (4592194)
Alessia Buscaino (185625)
Matthew Z. Anderson (7512680)
Derek J. Sullivan (17549793)
Gary P. Moran (12859629)

December 2023

Genes differentially expressed (FDR q 2.0) between PENO-TLOγ11 complemented mutant and tlo null mut...

Genes differentially expressed (FDR q <0.05, FC > 2.0) between PENO-TLOα1 complemented mutant and tlo null mutant (CC16) in YEPD during exponential growth.

Jessica Fletcher (3414134)
James O’Connor-Moneley (17549781)
Dean Frawley (6476027)
Peter R. Flanagan (5540714)
Leenah Alaalm (11344965)
Pilar Menendez-Manjon (17549784)
Samuel Vega Estevez (17549787)
Shane Hendricks (17549790)
Andrew L. Woodruff (4592194)
Alessia Buscaino (185625)
Matthew Z. Anderson (7512680)
Derek J. Sullivan (17549793)
Gary P. Moran (12859629)

December 2023

Genes differentially expressed (FDR q 2.0) between PENO-TLOα1 complemented mutant and tlo null muta...

Gene differentially expressed (FDR q <0.05, FC > 2.0) between PENO-TLOβ2 complemented mutant and tlo null mutant (CC16) in YEPD during exponential growth.

Jessica Fletcher (3414134)
James O’Connor-Moneley (17549781)
Dean Frawley (6476027)
Peter R. Flanagan (5540714)
Leenah Alaalm (11344965)
Pilar Menendez-Manjon (17549784)
Samuel Vega Estevez (17549787)
Shane Hendricks (17549790)
Andrew L. Woodruff (4592194)
Alessia Buscaino (185625)
Matthew Z. Anderson (7512680)
Derek J. Sullivan (17549793)
Gary P. Moran (12859629)

December 2023

Gene differentially expressed (FDR q 2.0) between PENO-TLOβ2 complemented mutant and tlo null mutan...

Genes differentially expressed (FDR q <0.05, FC > 2.0) between MAY1244 and tlo null mutant (CC16) in YEPD during exponential growth.

Jessica Fletcher (3414134)
James O’Connor-Moneley (17549781)
Dean Frawley (6476027)
Peter R. Flanagan (5540714)
Leenah Alaalm (11344965)
Pilar Menendez-Manjon (17549784)
Samuel Vega Estevez (17549787)
Shane Hendricks (17549790)
Andrew L. Woodruff (4592194)
Alessia Buscaino (185625)
Matthew Z. Anderson (7512680)
Derek J. Sullivan (17549793)
Gary P. Moran (12859629)

December 2023

Genes differentially expressed (FDR q 2.0) between MAY1244 and tlo null mutant (CC16) in YEPD durin...

Gene expression in PENO-TLO complemented strains.

Jessica Fletcher (3414134)
James O’Connor-Moneley (17549781)
Dean Frawley (6476027)
Peter R. Flanagan (5540714)
Leenah Alaalm (11344965)
Pilar Menendez-Manjon (17549784)
Samuel Vega Estevez (17549787)
Shane Hendricks (17549790)
Andrew L. Woodruff (4592194)
Alessia Buscaino (185625)
Matthew Z. Anderson (7512680)
Derek J. Sullivan (17549793)
Gary P. Moran (12859629)

December 2023

(A) Volcano plots with spots representing genes with 2-fold or more change in gene expression (blue ...

Differential expression and mutant fitness are poorly correlated.

Keith H. Turner (255854)
Jake Everett (603556)
Urvish Trivedi (603557)
Kendra P. Rumbaugh (141073)
Marvin Whiteley (225919)

July 2014

1Spearman rank correlation coefficient between fold change expression and fold change mutant abun...

Mutation enrichment per gene in WES data from 107 G1 rescues.

Kärt Tomberg (3181536)
Randal J. Westrick (3181542)
Emilee N. Kotnik (5724692)
Audrey C. Cleuren (5724695)
David R Siemieniak (5724698)
Guojing Zhu (5724701)
Thomas L. Saunders (235029)
David Ginsburg (402494)

September 2018

All genes with potentially deleterious ENU mutations are sorted by their chromosomal position on the...

Analysis of the functional gene set enrichment after 24 h ZEA treatment by GSEA.

Mei Yu So (558992)
ZhiPeng Tian (558993)
Yong Shian Phoon (558994)
Sha Sha (558995)
Michael N. Antoniou (558996)
JiangWen Zhang (5658922)
Rudolf S. S. Wu (131466)
Kian C Tan-Un (558997)

May 2014

Differential gene expression was ranked by fold change. The most up-regulated genes are shown on ...

Gene set enrichment analysis (GSEA) of genes under negative regulation by NF90/NF110.

Ting-Hsuan Wu (5028911)
Lingfang Shi (74325)
Jessika Adrian (527358)
Minyi Shi (179103)
Ramesh V. Nair (5028914)
Michael P. Snyder (179108)
Peter N. Kao (74331)

March 2018

Gene set enrichment analysis (GSEA) of genes under negative regulation by NF90/NF110.</p

Classification of genes downregulated in E18.5 vs. E16.5 PLECs (FC≤-2, p<0.05, FDR q<0.25).

Timothy A. Norman Jr. (6694004)
Adam C. Gower (190001)
Felicia Chen (6694007)
Alan Fine (456361)

May 2019

Classification of genes downregulated in E18.5 vs. E16.5 PLECs (FC≤-2, p<0.05, FDR q<0.25).</p

Differentially enriched Gene Ontology biological processes among all target genes segmented by low and high hazard of ovarian cancer death or recurrence identified by set enrichment analyses.

Kristin R. Delfino (388573)
Sandra L. Rodriguez-Zas (19332)

March 2013

1− hazard genes: number of genes that have a negative association between the hazard of ovarian c...

Differential expression of genes in the cell cycle pathway.

Russell J. Butterfield (4688206)
Diane M. Dunn (100892)
Ying Hu (14950)
Kory Johnson (814455)
Carsten G. Bönnemann (4688209)
Robert B. Weiss (100894)

December 2017

Differential expression of genes in the cell cycle pathway (hsa04110, upper panel) and DNA replic...

Gene categories negatively enriched (FDR q <0.1) in GSEA analysis of the <i>P</i><sub><i>ENO</i></sub><i>-TLO</i>β<i>2</i> complemented mutant versus the <i>tlo</i> null mutant (CC16) in YEPD during exponential growth.

Abstract

Extracted data

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