Additional file 1 of Complete chloroplast genome sequences of the ornamental plant Prunus cistena and comparative and phylogenetic analyses with its closely related species

Additional file 1: Fig. S1. Statistical plot of interspersed repeats sequences.The abscissa is the length of the interspersed repeats, and the ordinate is the number of interspersed repeats. F stands for forward repeat, P for palindromic repeat, R for reverse repeat, and C for complementary repeat. Fig. S2. Collinearity analysis of chloroplast genome sequence. The long squares represent the similarity between genomes, and the lines between the long squares represent a collinear relationship. Short squares represent gene positions for each genome. Where white represents CDS, green represents tRNA, and red represents rRNA. Fig. S3. Comparative analysis of chloroplast structure of P. cistena and proximal species. The two outermost circles describe the length and direction of genes in the genome; the circles inside represent similar results compared with other reference genomes. The black circles represent GC content, Green represents GC-skew+ and purple represents GC-skew-. Fig. S4. Comparative analysis of the gene nucleotide variability (pi) values of six Prunus species.The X-axis and Y-axis show the genes and the pi values, respectively. Table S1. Genes with introns in the Prunus cistena CP genomes. Table S2. RSCU usage of Prunus cistena CP genome. Table S3. The Ka/Ks value of P. cistena and five other Prunus species