Data assimilation aims at providing an initial state as accurate as possible for numerical weather prediction models, using two main sources of information : observations and a recent forecast called the “background”. Both are affected by systematic and random errors. The precise estimation of the distribution of these errors is crucial for the performance of data assimilation. In particular, background error covariances can be estimated by Monte-Carlo methods, which sample from an ensemble of perturbed forecasts. Because of computational costs, the ensemble size is much smaller than the dimension of the error covariances, and statistics estimated in this way are spoiled with sampling noise. Filtering is necessary before any further use. Th...