Pathway enrichment results for weighted correlation network analysis metabolite modules combining untreated, days 3, 14, and 30 IR in HILIC and RP phases.

Metabolomic correlation network analysis.

Gerardo Sánchez (156111)
Cristina Besada (156116)
María Luisa Badenes (156123)
Antonio José Monforte (156129)
Antonio Granell (156136)

June 2012

The main clusters identified in Fig. 1 are highlighted with a dotted red line. Nodes are codified...

Pathway analysis results from MetaboAnalyst 3.0.

Pawadee Lohavanichbutr (102084)
Yuzheng Zhang (102049)
Pei Wang (102036)
Haiwei Gu (1461157)
G. A. Nagana Gowda (186757)
Danijel Djukovic (1763815)
Matthew F. Buas (749164)
Daniel Raftery (186766)
Chu Chen (102135)

September 2018

The pathway analysis was based on 108 unique metabolites from Targeted LC-MS aqueous and NMR platfor...

Pathway and network analysis of 24 metabolites recognized by IPA from the candidates discovered by GC-MS and LC-MS based analyses.

Mohammad R. Nezami Ranjbar (747821)
Yue Luo (728594)
Cristina Di Poto (747822)
Rency S. Varghese (747823)
Alessia Ferrarini (747824)
Chi Zhang (9857)
Naglaa I. Sarhan (747825)
Hanan Soliman (747826)
Mahlet G. Tadesse (226097)
Dina H. Ziada (747827)
Rabindra Roy (747828)
Habtom W. Ressom (250082)

June 2015

A: top 10 canonical pathways based on 24 metabolites. B: network involving 13 out of the 24 metab...

Pathway enrichment results for individual weighted correlation network analysis metabolite modules at days 3, 14, and 30 IR in HILIC and RP phases.

Lauren G. Buss (17419758)
Diogo De Oliveira Pessoa (17419761)
Justin M. Snider (17419764)
Megha Padi (127447)
Jessica A. Martinez (2297254)
Kirsten H. Limesand (8057579)

November 2023

Pathway enrichment results for individual weighted correlation network analysis metabolite modules a...

Significant (Padj<0.25) weighted correlation network analysis (WGCNA) metabolite modules with pathway enrichment annotation at days 3, 14, and 30 IR compared to untreated in HILIC and RP phases.

Lauren G. Buss (17419758)
Diogo De Oliveira Pessoa (17419761)
Justin M. Snider (17419764)
Megha Padi (127447)
Jessica A. Martinez (2297254)
Kirsten H. Limesand (8057579)

November 2023

Significant (Padj<0.25) weighted correlation network analysis (WGCNA) metabolite modules with pathwa...

Leading-edge metabolites in enriched pathways at days 3, 14, and 30 IR in HILIC and RP phases.

Lauren G. Buss (17419758)
Diogo De Oliveira Pessoa (17419761)
Justin M. Snider (17419764)
Megha Padi (127447)
Jessica A. Martinez (2297254)
Kirsten H. Limesand (8057579)

November 2023

Leading-edge metabolites in enriched pathways at days 3, 14, and 30 IR in HILIC and RP phases.</p

Full list of pathways annotated to MetaMapp metabolite communities at days 3, 14, and 30 IR in HILIC and RP phases.

Lauren G. Buss (17419758)
Diogo De Oliveira Pessoa (17419761)
Justin M. Snider (17419764)
Megha Padi (127447)
Jessica A. Martinez (2297254)
Kirsten H. Limesand (8057579)

November 2023

Full list of pathways annotated to MetaMapp metabolite communities at days 3, 14, and 30 IR in HILIC...

Correlation between metabolite significance, module membership and maximum adjacency ratio for modules of weighted network analysis.

Julia Welzenbach (2504284)
Christiane Neuhoff (412997)
Christian Looft (413001)
Karl Schellander (79383)
Ernst Tholen (79379)
Christine Große-Brinkhaus (412998)

February 2016

Correlation between metabolite significance, module membership and maximum adjacency ratio for mo...

Full GSEA pathway enrichment results at days 3, 14, and 30 IR in HILIC and RP phases.

Lauren G. Buss (17419758)
Diogo De Oliveira Pessoa (17419761)
Justin M. Snider (17419764)
Megha Padi (127447)
Jessica A. Martinez (2297254)
Kirsten H. Limesand (8057579)

November 2023

Full GSEA pathway enrichment results at days 3, 14, and 30 IR in HILIC and RP phases.</p

MetaMapp network analysis at day 14 IR compared to untreated.

Lauren G. Buss (17419758)
Diogo De Oliveira Pessoa (17419761)
Justin M. Snider (17419764)
Megha Padi (127447)
Jessica A. Martinez (2297254)
Kirsten H. Limesand (8057579)

November 2023

A) HILIC phase. B) RP phase. Rectangles correspond to individual metabolites, edges denote chemical ...

MetaMapp network analysis identifies significant metabolite clusters at day 3 IR.

Lauren G. Buss (17419758)
Diogo De Oliveira Pessoa (17419761)
Justin M. Snider (17419764)
Megha Padi (127447)
Jessica A. Martinez (2297254)
Kirsten H. Limesand (8057579)

November 2023

A) HILIC phase. B) RP phase. Rectangles correspond to individual metabolites, edges denote chemical ...

MetaMapp network analysis at day 30 IR compared to untreated.

Lauren G. Buss (17419758)
Diogo De Oliveira Pessoa (17419761)
Justin M. Snider (17419764)
Megha Padi (127447)
Jessica A. Martinez (2297254)
Kirsten H. Limesand (8057579)

November 2023

A) HILIC phase. B) RP phase. Rectangles correspond to individual metabolites, edges denote chemical ...

Correlation analysis of the 61 differential metabolites, marked on the hierarchical clustering plot to understand the potential relationships among metabolites.

Nazima Nasrullah (6874496)
Javed Ahmad (442007)
Monica Saifi (6874490)
Irum Gul Shah (14573153)
Umara Nissar (6874499)
Syed Naved Quadri (13343800)
Kudsiya Ashrafi (12399613)
Malik Zainul Abdin (12399616)

February 2023

Correlation analysis of the 61 differential metabolites, marked on the hierarchical clustering plot ...

Pathway enrichment Summary of the pathways that were significantly enriched (p<0.05) in each meta-pathway associated with HNSCC.

Elana J. Fertig (194738)
Ana Markovic (479428)
Ludmila V. Danilova (479429)
Daria A. Gaykalova (121387)
Leslie Cope (49815)
Christine H. Chung (242076)
Michael F. Ochs (133998)
Joseph A. Califano (121399)

November 2013

Pathway enrichment Summary of the pathways that were significantly enriched (p<0.05) in each meta...

Selection of metabolites for joint analysis based on their ranking in top 30 metabolites in correlation analysis, metabolite significance of weighted network analysis and variable importance of random forest regression.

Julia Welzenbach (2504284)
Christiane Neuhoff (412997)
Christian Looft (413001)
Karl Schellander (79383)
Ernst Tholen (79379)
Christine Große-Brinkhaus (412998)

February 2016

Selection of metabolites for joint analysis based on their ranking in top 30 metabolites in corre...

Metabolomic correlation network analysis.

Gerardo Sánchez (156111)
Cristina Besada (156116)
María Luisa Badenes (156123)
Antonio José Monforte (156129)
Antonio Granell (156136)

June 2012

The main clusters identified in Fig. 1 are highlighted with a dotted red line. Nodes are codified...

Pathway analysis results from MetaboAnalyst 3.0.

Pawadee Lohavanichbutr (102084)
Yuzheng Zhang (102049)
Pei Wang (102036)
Haiwei Gu (1461157)
G. A. Nagana Gowda (186757)
Danijel Djukovic (1763815)
Matthew F. Buas (749164)
Daniel Raftery (186766)
Chu Chen (102135)

September 2018

The pathway analysis was based on 108 unique metabolites from Targeted LC-MS aqueous and NMR platfor...

Pathway and network analysis of 24 metabolites recognized by IPA from the candidates discovered by GC-MS and LC-MS based analyses.

Mohammad R. Nezami Ranjbar (747821)
Yue Luo (728594)
Cristina Di Poto (747822)
Rency S. Varghese (747823)
Alessia Ferrarini (747824)
Chi Zhang (9857)
Naglaa I. Sarhan (747825)
Hanan Soliman (747826)
Mahlet G. Tadesse (226097)
Dina H. Ziada (747827)
Rabindra Roy (747828)
Habtom W. Ressom (250082)

June 2015

A: top 10 canonical pathways based on 24 metabolites. B: network involving 13 out of the 24 metab...

Pathway enrichment results for individual weighted correlation network analysis metabolite modules at days 3, 14, and 30 IR in HILIC and RP phases.

Lauren G. Buss (17419758)
Diogo De Oliveira Pessoa (17419761)
Justin M. Snider (17419764)
Megha Padi (127447)
Jessica A. Martinez (2297254)
Kirsten H. Limesand (8057579)

November 2023

Pathway enrichment results for individual weighted correlation network analysis metabolite modules a...

Significant (Padj<0.25) weighted correlation network analysis (WGCNA) metabolite modules with pathway enrichment annotation at days 3, 14, and 30 IR compared to untreated in HILIC and RP phases.

Lauren G. Buss (17419758)
Diogo De Oliveira Pessoa (17419761)
Justin M. Snider (17419764)
Megha Padi (127447)
Jessica A. Martinez (2297254)
Kirsten H. Limesand (8057579)

November 2023

Significant (Padj<0.25) weighted correlation network analysis (WGCNA) metabolite modules with pathwa...

Leading-edge metabolites in enriched pathways at days 3, 14, and 30 IR in HILIC and RP phases.

Lauren G. Buss (17419758)
Diogo De Oliveira Pessoa (17419761)
Justin M. Snider (17419764)
Megha Padi (127447)
Jessica A. Martinez (2297254)
Kirsten H. Limesand (8057579)

November 2023

Leading-edge metabolites in enriched pathways at days 3, 14, and 30 IR in HILIC and RP phases.</p

Full list of pathways annotated to MetaMapp metabolite communities at days 3, 14, and 30 IR in HILIC and RP phases.

Lauren G. Buss (17419758)
Diogo De Oliveira Pessoa (17419761)
Justin M. Snider (17419764)
Megha Padi (127447)
Jessica A. Martinez (2297254)
Kirsten H. Limesand (8057579)

November 2023

Full list of pathways annotated to MetaMapp metabolite communities at days 3, 14, and 30 IR in HILIC...

Correlation between metabolite significance, module membership and maximum adjacency ratio for modules of weighted network analysis.

Julia Welzenbach (2504284)
Christiane Neuhoff (412997)
Christian Looft (413001)
Karl Schellander (79383)
Ernst Tholen (79379)
Christine Große-Brinkhaus (412998)

February 2016

Correlation between metabolite significance, module membership and maximum adjacency ratio for mo...

Full GSEA pathway enrichment results at days 3, 14, and 30 IR in HILIC and RP phases.

Lauren G. Buss (17419758)
Diogo De Oliveira Pessoa (17419761)
Justin M. Snider (17419764)
Megha Padi (127447)
Jessica A. Martinez (2297254)
Kirsten H. Limesand (8057579)

November 2023

Full GSEA pathway enrichment results at days 3, 14, and 30 IR in HILIC and RP phases.</p

MetaMapp network analysis at day 14 IR compared to untreated.

Lauren G. Buss (17419758)
Diogo De Oliveira Pessoa (17419761)
Justin M. Snider (17419764)
Megha Padi (127447)
Jessica A. Martinez (2297254)
Kirsten H. Limesand (8057579)

November 2023

A) HILIC phase. B) RP phase. Rectangles correspond to individual metabolites, edges denote chemical ...

MetaMapp network analysis identifies significant metabolite clusters at day 3 IR.

Lauren G. Buss (17419758)
Diogo De Oliveira Pessoa (17419761)
Justin M. Snider (17419764)
Megha Padi (127447)
Jessica A. Martinez (2297254)
Kirsten H. Limesand (8057579)

November 2023

A) HILIC phase. B) RP phase. Rectangles correspond to individual metabolites, edges denote chemical ...

MetaMapp network analysis at day 30 IR compared to untreated.

Lauren G. Buss (17419758)
Diogo De Oliveira Pessoa (17419761)
Justin M. Snider (17419764)
Megha Padi (127447)
Jessica A. Martinez (2297254)
Kirsten H. Limesand (8057579)

November 2023

A) HILIC phase. B) RP phase. Rectangles correspond to individual metabolites, edges denote chemical ...

Correlation analysis of the 61 differential metabolites, marked on the hierarchical clustering plot to understand the potential relationships among metabolites.

Nazima Nasrullah (6874496)
Javed Ahmad (442007)
Monica Saifi (6874490)
Irum Gul Shah (14573153)
Umara Nissar (6874499)
Syed Naved Quadri (13343800)
Kudsiya Ashrafi (12399613)
Malik Zainul Abdin (12399616)

February 2023

Correlation analysis of the 61 differential metabolites, marked on the hierarchical clustering plot ...

Pathway enrichment Summary of the pathways that were significantly enriched (p<0.05) in each meta-pathway associated with HNSCC.

Elana J. Fertig (194738)
Ana Markovic (479428)
Ludmila V. Danilova (479429)
Daria A. Gaykalova (121387)
Leslie Cope (49815)
Christine H. Chung (242076)
Michael F. Ochs (133998)
Joseph A. Califano (121399)

November 2013

Pathway enrichment Summary of the pathways that were significantly enriched (p<0.05) in each meta...

Selection of metabolites for joint analysis based on their ranking in top 30 metabolites in correlation analysis, metabolite significance of weighted network analysis and variable importance of random forest regression.

Julia Welzenbach (2504284)
Christiane Neuhoff (412997)
Christian Looft (413001)
Karl Schellander (79383)
Ernst Tholen (79379)
Christine Große-Brinkhaus (412998)

February 2016

Selection of metabolites for joint analysis based on their ranking in top 30 metabolites in corre...

Metabolomic correlation network analysis.

Gerardo Sánchez (156111)
Cristina Besada (156116)
María Luisa Badenes (156123)
Antonio José Monforte (156129)
Antonio Granell (156136)

June 2012

The main clusters identified in Fig. 1 are highlighted with a dotted red line. Nodes are codified...

Pathway analysis results from MetaboAnalyst 3.0.

Pawadee Lohavanichbutr (102084)
Yuzheng Zhang (102049)
Pei Wang (102036)
Haiwei Gu (1461157)
G. A. Nagana Gowda (186757)
Danijel Djukovic (1763815)
Matthew F. Buas (749164)
Daniel Raftery (186766)
Chu Chen (102135)

September 2018

The pathway analysis was based on 108 unique metabolites from Targeted LC-MS aqueous and NMR platfor...

Pathway and network analysis of 24 metabolites recognized by IPA from the candidates discovered by GC-MS and LC-MS based analyses.

Mohammad R. Nezami Ranjbar (747821)
Yue Luo (728594)
Cristina Di Poto (747822)
Rency S. Varghese (747823)
Alessia Ferrarini (747824)
Chi Zhang (9857)
Naglaa I. Sarhan (747825)
Hanan Soliman (747826)
Mahlet G. Tadesse (226097)
Dina H. Ziada (747827)
Rabindra Roy (747828)
Habtom W. Ressom (250082)

June 2015

A: top 10 canonical pathways based on 24 metabolites. B: network involving 13 out of the 24 metab...

Pathway enrichment results for weighted correlation network analysis metabolite modules combining untreated, days 3, 14, and 30 IR in HILIC and RP phases.

Abstract

Extracted data

Pathway enrichment results for weighted correlation network analysis metabolite modules combining untreated, days 3, 14, and 30 IR in HILIC and RP phases.

Abstract

Extracted data

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