Umbrella sampling molecular dynamics simulations are widely used to enhance sampling along the reaction coordinates of chemical reactions. The effect of the artificial bias can be removed using methods such as the dynamic weighted histogram analysis method (DHAM), which in addition to the global free energy profile also provides kinetic information about barrier-crossing rates directly from the Markov matrix. Here we present a binless formulation of DHAM that extends DHAM to high-dimensional and Hamiltonian-based biasing to allow the study of electron transfer (ET) processes, for which enhanced sampling is usually not possible based on simple geometric grounds. We show the capabilities of binless DHAM on examples such as aqueous ferrous-fer...
We provide a critical examination of two different methods for generating a donor acceptor electroni...
Thesis: Ph. D., Massachusetts Institute of Technology, Department of Chemistry, 2016.This electronic...
International audienceBeyond the dielectric continuum description initiated by Marcus theory, the st...
We present an algorithm to calculate free energies and rates from molecular simulations on biased po...
The weighted histogram analysis method (WHAM) is widely used to obtain accurate free energies from b...
A general approach to calculate the diabatic surfaces for electron-transfer reactions is presented, ...
Electron transfer (ET) reactions are one of the most important processes in chemistry and biology. B...
The use of ring polymer molecular dynamics (RPMD) for the direct simulation of electron transfer (ET...
This work explores the possibility of simulating an electron transfer process between a donor and an...
The simulation of general non-adiabatic processes, such as electron transfer, proton-transfer, and p...
This thesis deals basically with some new aspects of the electron transfer theory. It is divided int...
This thesis discusses recent progress in the development of path-integral methods for non-adiabatic ...
Recent work, particularly by Cederbaum and co-workers, has identified the phenomenon of charge migra...
A microscopic computer simulation model for electrochemical reactions is presented. Heterogeneous el...
Path sampling techniques have been shown to be very efficient tools to study rare events in chemical...
We provide a critical examination of two different methods for generating a donor acceptor electroni...
Thesis: Ph. D., Massachusetts Institute of Technology, Department of Chemistry, 2016.This electronic...
International audienceBeyond the dielectric continuum description initiated by Marcus theory, the st...
We present an algorithm to calculate free energies and rates from molecular simulations on biased po...
The weighted histogram analysis method (WHAM) is widely used to obtain accurate free energies from b...
A general approach to calculate the diabatic surfaces for electron-transfer reactions is presented, ...
Electron transfer (ET) reactions are one of the most important processes in chemistry and biology. B...
The use of ring polymer molecular dynamics (RPMD) for the direct simulation of electron transfer (ET...
This work explores the possibility of simulating an electron transfer process between a donor and an...
The simulation of general non-adiabatic processes, such as electron transfer, proton-transfer, and p...
This thesis deals basically with some new aspects of the electron transfer theory. It is divided int...
This thesis discusses recent progress in the development of path-integral methods for non-adiabatic ...
Recent work, particularly by Cederbaum and co-workers, has identified the phenomenon of charge migra...
A microscopic computer simulation model for electrochemical reactions is presented. Heterogeneous el...
Path sampling techniques have been shown to be very efficient tools to study rare events in chemical...
We provide a critical examination of two different methods for generating a donor acceptor electroni...
Thesis: Ph. D., Massachusetts Institute of Technology, Department of Chemistry, 2016.This electronic...
International audienceBeyond the dielectric continuum description initiated by Marcus theory, the st...