GO enrichment analysis for genes overlapping bins identified as differentially enriched via DiffBind (adjusted p value < 0.05) and overlapping a bin with a difference in PBS of > 0.9.

GO enrichment results of differentially expressed genes under cold challenge.

Xianhong Meng (3228486)
Lijun Dong (6553)
Xiaoli Shi (6497)
Xupeng Li (6564821)
Juan Sui (3854179)
Kun Luo (240608)
Sheng Luan (445349)
Baolong Chen (4397896)
Baoxiang Cao (3228483)
Jiawang Cao (4397899)
Jie Kong (702788)

April 2019

GO enrichment results of differentially expressed genes under cold challenge.</p

Comparing the TF enrichment analysis of genes regulated by the first layer hidden nodes with different activation numbers.

Songjian Lu (406224)
Xiaonan Fan (5743178)
Lujia Chen (178950)
Xinghua Lu (4638)

September 2018

Comparing the TF enrichment analysis of genes regulated by the first layer hidden nodes with differe...

Enrichment analysis of GO terms.

Patricia D. C. Schaker (753880)
Alessandra C. Palhares (3095286)
Lucas M. Taniguti (753879)
Leila P. Peters (753882)
Silvana Creste (753890)
Karen S. Aitken (753888)
Marie-Anne Van Sluys (55590)
João P. Kitajima (3095289)
Maria L. C. Vieira (753891)
Claudia B. Monteiro-Vitorello (466165)

September 2016

DEGs were submitted to enrichment analysis in BLAST2GO software, and a p-value ≤ 0.05 was used as...

GO enrichment analysis for genes overlapping bins identified as differentially enriched via DiffBind (adjusted p value < 0.05).

Vivian Hecht (17262922)
Kevin Dong (8719044)
Sreshtaa Rajesh (17262925)
Polina Shpilker (17262928)
Siddarth Wekhande (17262931)
Noam Shoresh (743824)

October 2023

GO enrichment analysis for genes overlapping bins identified as differentially enriched via DiffBind...

Comparing the GO enrichment analysis of genes regulated by the first layer hidden nodes with different activation numbers.

Songjian Lu (406224)
Xiaonan Fan (5743178)
Lujia Chen (178950)
Xinghua Lu (4638)

September 2018

Comparing the GO enrichment analysis of genes regulated by the first layer hidden nodes with differe...

Comparing the GO enrichment analysis of genes in perturbation modules obtained using different methods.

Songjian Lu (406224)
Xiaonan Fan (5743178)
Lujia Chen (178950)
Xinghua Lu (4638)

September 2018

Comparing the GO enrichment analysis of genes in perturbation modules obtained using different metho...

Enrichment analysis of differentially expressed genes: distribution by gene ontology (GO) processes.

Bistra B. Nankova (623398)
Raj Agarwal (623399)
Derrick F. MacFabe (512968)
Edmund F. La Gamma (623400)

August 2014

Differentially expressed genes in BA and PPA groups (t-test compared to control group p<0.01) wer...

GO enrichment analysis for the target genes of differentially expressed phosphoproteins between CF and MF group.

Xiaowei Zhao (10501319)

November 2022

GO enrichment analysis for the target genes of differentially expressed phosphoproteins between CF a...

Enriched common GO terms among differentially expressed genes by DAVID analysis.

Seon-Pil Jin (17364626)
Joong Heon Suh (17364629)
Chang-Eop Kim (6559700)
Inn Gyung Oh (17364632)
Eun Young Seo (17364635)
Min-Kyoung Kim (373831)
Kyeong-No Yoon (15239372)
Jin Ho Chung (14281628)

November 2023

Enriched common GO terms among differentially expressed genes by DAVID analysis.</p

Scatterplot of differentially expressed genes from GO enrichment analysis between A and B groups (A); A1 and A2 groups (B); B1 and B2 groups (C).

Hai Nguyen Thanh (647114)
Liangjie Zhao (647115)
Qigen Liu (647116)

October 2014

Scatterplot of differentially expressed genes from GO enrichment analysis between A and B groups ...

GO-enrichment analysis for comparison T1–C1, showing the most specific over- and under-represented biological process GO-terms for both up- and down-regulation.

Lina De Smet (301198)
Dieter De Koker (525060)
Alyse K. Hawley (525061)
Leonard J. Foster (23896)
Paul De Vos (166671)
Dirk C. de Graaf (217346)

February 2014

NS: number of differentially expressed genes, annotated with a particular GO-term. FE: fold enric...

Top 10 pathway of GO enrichment analysis using the differentially expressed genes identified by IMPACC in Yan data set, with information on adjusted p-values, fold enrichment and count.

Luqin Gan (13899837)
Genevera I. Allen (8026163)

October 2022

Top 10 pathway of GO enrichment analysis using the differentially expressed genes identified by IMPA...

Gene Ontology (GO) enrichment analysis of up- and downregulated genes.

Bernardo Rodamilans (588298)
David San León (588299)
Louisa Mühlberger (588300)
Thierry Candresse (158605)
Michael Neumüller (588301)
Juan Carlos Oliveros (154360)
Juan Antonio García (135036)

June 2014

Blue boxes separate the different areas of GO-Term distribution. The purple box delimits the Inte...

GO annotation of the differentially expressed genes.

Xiao Liu (65413)
Zhiwen Xu (28724)
Ling Zhu (56356)
Shan Liao (418901)
Wanzhu Guo (665714)

November 2014

A GO analysis to categorize the differentially expressed genes into GO categories was performed. ...

Pathway enrichment analysis of differentially expressed genes (Top ten enriched pathways are shown).

Jingjuan Li (795743)
Qian Ding (686082)
Fengde Wang (5665297)
Yihui Zhang (578676)
Huayin Li (795744)
Jianwei Gao (795745)

September 2015

Pathway enrichment analysis of differentially expressed genes (Top ten enriched pathways are show...

GO enrichment results of differentially expressed genes under cold challenge.

Xianhong Meng (3228486)
Lijun Dong (6553)
Xiaoli Shi (6497)
Xupeng Li (6564821)
Juan Sui (3854179)
Kun Luo (240608)
Sheng Luan (445349)
Baolong Chen (4397896)
Baoxiang Cao (3228483)
Jiawang Cao (4397899)
Jie Kong (702788)

April 2019

GO enrichment results of differentially expressed genes under cold challenge.</p

Comparing the TF enrichment analysis of genes regulated by the first layer hidden nodes with different activation numbers.

Songjian Lu (406224)
Xiaonan Fan (5743178)
Lujia Chen (178950)
Xinghua Lu (4638)

September 2018

Comparing the TF enrichment analysis of genes regulated by the first layer hidden nodes with differe...

Enrichment analysis of GO terms.

Patricia D. C. Schaker (753880)
Alessandra C. Palhares (3095286)
Lucas M. Taniguti (753879)
Leila P. Peters (753882)
Silvana Creste (753890)
Karen S. Aitken (753888)
Marie-Anne Van Sluys (55590)
João P. Kitajima (3095289)
Maria L. C. Vieira (753891)
Claudia B. Monteiro-Vitorello (466165)

September 2016

DEGs were submitted to enrichment analysis in BLAST2GO software, and a p-value ≤ 0.05 was used as...

GO enrichment analysis for genes overlapping bins identified as differentially enriched via DiffBind (adjusted p value < 0.05).

Vivian Hecht (17262922)
Kevin Dong (8719044)
Sreshtaa Rajesh (17262925)
Polina Shpilker (17262928)
Siddarth Wekhande (17262931)
Noam Shoresh (743824)

October 2023

GO enrichment analysis for genes overlapping bins identified as differentially enriched via DiffBind...

Comparing the GO enrichment analysis of genes regulated by the first layer hidden nodes with different activation numbers.

Songjian Lu (406224)
Xiaonan Fan (5743178)
Lujia Chen (178950)
Xinghua Lu (4638)

September 2018

Comparing the GO enrichment analysis of genes regulated by the first layer hidden nodes with differe...

Comparing the GO enrichment analysis of genes in perturbation modules obtained using different methods.

Songjian Lu (406224)
Xiaonan Fan (5743178)
Lujia Chen (178950)
Xinghua Lu (4638)

September 2018

Comparing the GO enrichment analysis of genes in perturbation modules obtained using different metho...

Enrichment analysis of differentially expressed genes: distribution by gene ontology (GO) processes.

Bistra B. Nankova (623398)
Raj Agarwal (623399)
Derrick F. MacFabe (512968)
Edmund F. La Gamma (623400)

August 2014

Differentially expressed genes in BA and PPA groups (t-test compared to control group p<0.01) wer...

GO enrichment analysis for the target genes of differentially expressed phosphoproteins between CF and MF group.

Xiaowei Zhao (10501319)

November 2022

GO enrichment analysis for the target genes of differentially expressed phosphoproteins between CF a...

Enriched common GO terms among differentially expressed genes by DAVID analysis.

Seon-Pil Jin (17364626)
Joong Heon Suh (17364629)
Chang-Eop Kim (6559700)
Inn Gyung Oh (17364632)
Eun Young Seo (17364635)
Min-Kyoung Kim (373831)
Kyeong-No Yoon (15239372)
Jin Ho Chung (14281628)

November 2023

Enriched common GO terms among differentially expressed genes by DAVID analysis.</p

Scatterplot of differentially expressed genes from GO enrichment analysis between A and B groups (A); A1 and A2 groups (B); B1 and B2 groups (C).

Hai Nguyen Thanh (647114)
Liangjie Zhao (647115)
Qigen Liu (647116)

October 2014

Scatterplot of differentially expressed genes from GO enrichment analysis between A and B groups ...

GO-enrichment analysis for comparison T1–C1, showing the most specific over- and under-represented biological process GO-terms for both up- and down-regulation.

Lina De Smet (301198)
Dieter De Koker (525060)
Alyse K. Hawley (525061)
Leonard J. Foster (23896)
Paul De Vos (166671)
Dirk C. de Graaf (217346)

February 2014

NS: number of differentially expressed genes, annotated with a particular GO-term. FE: fold enric...

Top 10 pathway of GO enrichment analysis using the differentially expressed genes identified by IMPACC in Yan data set, with information on adjusted p-values, fold enrichment and count.

Luqin Gan (13899837)
Genevera I. Allen (8026163)

October 2022

Top 10 pathway of GO enrichment analysis using the differentially expressed genes identified by IMPA...

Gene Ontology (GO) enrichment analysis of up- and downregulated genes.

Bernardo Rodamilans (588298)
David San León (588299)
Louisa Mühlberger (588300)
Thierry Candresse (158605)
Michael Neumüller (588301)
Juan Carlos Oliveros (154360)
Juan Antonio García (135036)

June 2014

Blue boxes separate the different areas of GO-Term distribution. The purple box delimits the Inte...

GO annotation of the differentially expressed genes.

Xiao Liu (65413)
Zhiwen Xu (28724)
Ling Zhu (56356)
Shan Liao (418901)
Wanzhu Guo (665714)

November 2014

A GO analysis to categorize the differentially expressed genes into GO categories was performed. ...

Pathway enrichment analysis of differentially expressed genes (Top ten enriched pathways are shown).

Jingjuan Li (795743)
Qian Ding (686082)
Fengde Wang (5665297)
Yihui Zhang (578676)
Huayin Li (795744)
Jianwei Gao (795745)

September 2015

Pathway enrichment analysis of differentially expressed genes (Top ten enriched pathways are show...

GO enrichment results of differentially expressed genes under cold challenge.

Xianhong Meng (3228486)
Lijun Dong (6553)
Xiaoli Shi (6497)
Xupeng Li (6564821)
Juan Sui (3854179)
Kun Luo (240608)
Sheng Luan (445349)
Baolong Chen (4397896)
Baoxiang Cao (3228483)
Jiawang Cao (4397899)
Jie Kong (702788)

April 2019

GO enrichment results of differentially expressed genes under cold challenge.</p

Comparing the TF enrichment analysis of genes regulated by the first layer hidden nodes with different activation numbers.

Songjian Lu (406224)
Xiaonan Fan (5743178)
Lujia Chen (178950)
Xinghua Lu (4638)

September 2018

Comparing the TF enrichment analysis of genes regulated by the first layer hidden nodes with differe...

Enrichment analysis of GO terms.

Patricia D. C. Schaker (753880)
Alessandra C. Palhares (3095286)
Lucas M. Taniguti (753879)
Leila P. Peters (753882)
Silvana Creste (753890)
Karen S. Aitken (753888)
Marie-Anne Van Sluys (55590)
João P. Kitajima (3095289)
Maria L. C. Vieira (753891)
Claudia B. Monteiro-Vitorello (466165)

September 2016

DEGs were submitted to enrichment analysis in BLAST2GO software, and a p-value ≤ 0.05 was used as...

GO enrichment analysis for genes overlapping bins identified as differentially enriched via DiffBind (adjusted p value < 0.05) and overlapping a bin with a difference in PBS of > 0.9.

Abstract

Extracted data

GO enrichment analysis for genes overlapping bins identified as differentially enriched via DiffBind (adjusted p value < 0.05) and overlapping a bin with a difference in PBS of > 0.9.

Abstract

Extracted data

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