Additional file 1 of Dynamic roles of small RNAs and DNA methylation associated with heterosis in allotetraploid cotton (Gossypium hirsutum L.)

Additional file 1: Table S1. Mean of mid and better parent heterosis observed for yield traits in two location and two-year field experimentation. Table S2. Statistics of RNA sequencing data production. Table S3. Overlapping differentially expressed genes among the in MH, SM, and 1DPA in hybrid. Table S4. Statistics of small RNA sequencing data production. Table S5. Number of the non-additively expressed genes had siRNA clusters in coding regions or 2kb flanking regions in MH, SM, and 1DPA. Table S6a. List of known differentially expressed miRNA in F1 and its Parents. S6b. List of target prediction of known miRNAs. S6c. List of target prediction of novel miRNAs. Table S7. Alignment summary statistics of whole-genome bisulfite sequencing (WGBS). Table S8. List of common DMRs among parental lines and hybrids. Table S9. Association of DMRs and sRNA among hybrid and its parental lines. Table S10. REVIGO combines the biological process GO with hybrid MPV DEGs. The unified terms of REVIGO GO are organized by major groups. To make understanding the data even easier, clusters are grouped into "main clusters" with broad categories. Table S11. Details of the primers used to validate RNA-seq and bisulfite sequencing data