Clustering performance in the GTEx dataset.

A) Clustering performance (ARI, y−axis, the higher the better) in the latent space of each model (x−axis) compared to the known tissue type. Each box represents the distribution of scores obtained for different hyperparameter settings within a specific VAE model. The middle line corresponds to the mean, while the edges of the box represent the first and third quartiles. B) Clustering performance (ARI) between the different VAE configurations in the TCGA (x−axis) and the GTEx(y−axis). Dots are colored after the different model and each dot represents a different hyperparameter configuration.