Trichohyalin (TCHH) is a protein found in ovine wool fibres. It is part of the interfilamentous matrix protein and cross-links both to itself and to the keratin intermediate filament proteins. TCHH is also believed to play a role in the regulation of calcium levels within the hair follicle. This study used PCR-single stranded conformational polymorphism (PCR-SSCP) analysis to investigate variation in the ovine TCHH gene (TCHH). Three sequence variants (A, B and C) were detected in 210 New Zealand (NZ) Romney, Merino, Corriedale, Poll Dorset and cross-bred sheep, with frequencies of 59.0%, 36.9% and 4.1%, respectively. Two single nucleotide polymorphisms (SNPs) were identified in these variants, one located in the 3′ region of intron 2 (c.13...