Pneumococcal Serotypes Colonise the Nasopharynx in Children at Different Densities
- Rodrigues, Fernanda
- Danon, Leon
- Morales-Aza, Begonia
- Sikora, Paulina
- Thors, Valtyr
- Ferreira, Muriel
- Gould, Katherine
- Hinds, Jason
- Finn, Adam
DOIAbstract
Prevalence of pneumococcal serotypes in carriage and disease has been described but absolute serotype colonisation densities have not been reported. 515 paediatric nasal swab DNA extracts were subjected to lytA qPCR and molecular serotyping by microarray. Absolute serotype densities were derived from total pneumococcal density (qPCR cycle threshold and standard curve) and relative abundance (microarray) and varied widely. Compared to all serotype densities observed, the strongest evidence of differences was seen for serotypes 21 and 35B (higher) and 3, 38 and non-typeables (lower) (p<0.05) with a similar hierarchy when only a single serotype carriage was assessed. There was no evidence of any overall density differences between children wit...
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