Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial Genomes. mSystems. 5 (2020)

Petit III, Robert A.
Read, Timothy D.

Publication date

March 2022

DOI

Abstract

v2.0.3 bactopia/bactopia "King Cobra" - 2022/03/23 Added logo and new metro style workflow added test profile for easy testing mashdist now outputs a merged TSV print missing required parameters in Bactopia Tools bump bakta to v1.4.0 Fixed typo in bakta subworkflow ismapper not available in bactopia-tools.nf kraken2 not available in bactopia-tools.nf Traits file being required for pangenome mashtree module not collecting all FASTA tests for ISMapper Full Changelog: https://github.com/bactopia/bactopia/compare/v2.0.2...v2.0.3If you use Bactopia, please cite it as below

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Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial Genomes. mSystems. 5 (2020)

Abstract

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Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial Genomes. mSystems. 5 (2020)

Abstract

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