v1.4.11 bactopia/bactopia "Metamorph Ring" - 2020/09/19 Added bactopia build checks if each environment is built before building Can specify bactopia build to build a specific environment Removed build numbers in Conda environment yamls Created separate Conda yamls for Linux and Mac NCBI assembly accessions will retrieve the most current version (e.g. .1, .2, .3, etc...) Fixed bactopia datasets trailing whitespace in species names bactopia datasets random subsample missing specified species when --limit and --include_genus used GitLab CI OSX compatibility Adaptive resource allocations Datasets are checked for existence Variant calls against references with multiple chromosome
This is a minor release containing some new functionality and bug fixes. Executables/Binaries Execut...
v1.5.5 bactopia/bactopia "Avenger's Earring" - 2021/01/04 Added --prefix option for bactopia prepar...
v1.4.10 bactopia/bactopia "Jelly Ring" - 2020/08/25 Added card is back as a default Ariba dataset A...
v1.5.0 bactopia/bactopia "Cassie Earring" - 2020/11/12 Added Conda environments will check if in sy...
v2.0.2 bactopia/bactopia "Black Mamba" - 2022/02/22 Added bactopia download which merges the bactop...
Major changes in v1.4.0 of Bactopia! Some key changes: New Bactopia Tools (eggNOG-mapper, ISMapper,...
v1.6.0 bactopia/bactopia "Harpoon" - 2021/01/22 Added bactopia pull to pre-build Singularity images...
Key changes: Temporarily removed CARD as default Ariba datasets for bactopia datasets. See https:/...
v1.5.6 bactopia/bactopia "Metal Slime Earring" - 2021/01/13 Added tweaks to the CI (via GitHub Acti...
Should fix issues: https://github.com/bactopia/bactopia/issues/116 and https://github.com/bactopia/b...
v1.4.9 bactopia/bactopia "Toreador's Ring" - 2020/08/23 Added Support for multiple accession bactop...
v1.5.4 bactopia/bactopia "Nemesis Earring" - 2020/12/17 Fixed quoted arguments being broken up (e.g...
v1.3.1 bactopia/bactopia "Emperor Hairpin" - 2020/04/20 Added summary tool now gives reason for ran...
This patch mainly fixes some issues with data pre-processing and imports, such as problems with unex...
v1.4.8 bactopia/bactopia "Shikaree Ring" - 2020/08/20 Added Versions are logged for Bactopia STDOUT...
This is a minor release containing some new functionality and bug fixes. Executables/Binaries Execut...
v1.5.5 bactopia/bactopia "Avenger's Earring" - 2021/01/04 Added --prefix option for bactopia prepar...
v1.4.10 bactopia/bactopia "Jelly Ring" - 2020/08/25 Added card is back as a default Ariba dataset A...
v1.5.0 bactopia/bactopia "Cassie Earring" - 2020/11/12 Added Conda environments will check if in sy...
v2.0.2 bactopia/bactopia "Black Mamba" - 2022/02/22 Added bactopia download which merges the bactop...
Major changes in v1.4.0 of Bactopia! Some key changes: New Bactopia Tools (eggNOG-mapper, ISMapper,...
v1.6.0 bactopia/bactopia "Harpoon" - 2021/01/22 Added bactopia pull to pre-build Singularity images...
Key changes: Temporarily removed CARD as default Ariba datasets for bactopia datasets. See https:/...
v1.5.6 bactopia/bactopia "Metal Slime Earring" - 2021/01/13 Added tweaks to the CI (via GitHub Acti...
Should fix issues: https://github.com/bactopia/bactopia/issues/116 and https://github.com/bactopia/b...
v1.4.9 bactopia/bactopia "Toreador's Ring" - 2020/08/23 Added Support for multiple accession bactop...
v1.5.4 bactopia/bactopia "Nemesis Earring" - 2020/12/17 Fixed quoted arguments being broken up (e.g...
v1.3.1 bactopia/bactopia "Emperor Hairpin" - 2020/04/20 Added summary tool now gives reason for ran...
This patch mainly fixes some issues with data pre-processing and imports, such as problems with unex...
v1.4.8 bactopia/bactopia "Shikaree Ring" - 2020/08/20 Added Versions are logged for Bactopia STDOUT...
This is a minor release containing some new functionality and bug fixes. Executables/Binaries Execut...
v1.5.5 bactopia/bactopia "Avenger's Earring" - 2021/01/04 Added --prefix option for bactopia prepar...
v1.4.10 bactopia/bactopia "Jelly Ring" - 2020/08/25 Added card is back as a default Ariba dataset A...