Key changes: Temporarily removed CARD as default Ariba datasets for bactopia datasets. See https://github.com/bactopia/bactopia/issues/113 for more details Added --skip_ariba option for bactopia datasets bactopia versions and bactopia citations now working again Typos, because typos Installation Conda: conda create -n bactopia -c conda-forge -c bioconda bactopia Docker: docker pull bactopia/bactopia Singularity: singularity pull library://rpetit3/bactopia/bactopia v1.4.3 bactopia/bactopia "Sattva Ring" - 2020/08/13 Added --skip_ariba option in bactopia datasets Fixed bactopia versions and bactopia citations improper execution Convert spaces to tabs in citation doc Corrected CheckM name in program version info file CARD no longer def...
v1.5.5 bactopia/bactopia "Avenger's Earring" - 2021/01/04 Added --prefix option for bactopia prepar...
v1.5.6 bactopia/bactopia "Metal Slime Earring" - 2021/01/13 Added tweaks to the CI (via GitHub Acti...
v1.7.1 bactopia/bactopia "Shellbuster" - 2021/06/04 Added bumped GTDB to v1.5.0 added soft ulimit f...
v1.4.8 bactopia/bactopia "Shikaree Ring" - 2020/08/20 Added Versions are logged for Bactopia STDOUT...
v1.4.10 bactopia/bactopia "Jelly Ring" - 2020/08/25 Added card is back as a default Ariba dataset A...
Should fix issues: https://github.com/bactopia/bactopia/issues/116 and https://github.com/bactopia/b...
Major changes in v1.4.0 of Bactopia! Some key changes: New Bactopia Tools (eggNOG-mapper, ISMapper,...
v1.3.1 bactopia/bactopia "Emperor Hairpin" - 2020/04/20 Added summary tool now gives reason for ran...
v1.4.11 bactopia/bactopia "Metamorph Ring" - 2020/09/19 Added bactopia build checks if each environ...
v1.5.0 bactopia/bactopia "Cassie Earring" - 2020/11/12 Added Conda environments will check if in sy...
v1.6.0 bactopia/bactopia "Harpoon" - 2021/01/22 Added bactopia pull to pre-build Singularity images...
Minor changes here. Most changes were updating citation info for Bactopia (published woohoo!). You c...
v1.4.6 bactopia/bactopia "Astral Ring" - 2020/08/17 Added Option to rebuild conda envs to default l...
v1.4.9 bactopia/bactopia "Toreador's Ring" - 2020/08/23 Added Support for multiple accession bactop...
v2.0.3 bactopia/bactopia "King Cobra" - 2022/03/23 Added logo and new metro style workflow added te...
v1.5.5 bactopia/bactopia "Avenger's Earring" - 2021/01/04 Added --prefix option for bactopia prepar...
v1.5.6 bactopia/bactopia "Metal Slime Earring" - 2021/01/13 Added tweaks to the CI (via GitHub Acti...
v1.7.1 bactopia/bactopia "Shellbuster" - 2021/06/04 Added bumped GTDB to v1.5.0 added soft ulimit f...
v1.4.8 bactopia/bactopia "Shikaree Ring" - 2020/08/20 Added Versions are logged for Bactopia STDOUT...
v1.4.10 bactopia/bactopia "Jelly Ring" - 2020/08/25 Added card is back as a default Ariba dataset A...
Should fix issues: https://github.com/bactopia/bactopia/issues/116 and https://github.com/bactopia/b...
Major changes in v1.4.0 of Bactopia! Some key changes: New Bactopia Tools (eggNOG-mapper, ISMapper,...
v1.3.1 bactopia/bactopia "Emperor Hairpin" - 2020/04/20 Added summary tool now gives reason for ran...
v1.4.11 bactopia/bactopia "Metamorph Ring" - 2020/09/19 Added bactopia build checks if each environ...
v1.5.0 bactopia/bactopia "Cassie Earring" - 2020/11/12 Added Conda environments will check if in sy...
v1.6.0 bactopia/bactopia "Harpoon" - 2021/01/22 Added bactopia pull to pre-build Singularity images...
Minor changes here. Most changes were updating citation info for Bactopia (published woohoo!). You c...
v1.4.6 bactopia/bactopia "Astral Ring" - 2020/08/17 Added Option to rebuild conda envs to default l...
v1.4.9 bactopia/bactopia "Toreador's Ring" - 2020/08/23 Added Support for multiple accession bactop...
v2.0.3 bactopia/bactopia "King Cobra" - 2022/03/23 Added logo and new metro style workflow added te...
v1.5.5 bactopia/bactopia "Avenger's Earring" - 2021/01/04 Added --prefix option for bactopia prepar...
v1.5.6 bactopia/bactopia "Metal Slime Earring" - 2021/01/13 Added tweaks to the CI (via GitHub Acti...
v1.7.1 bactopia/bactopia "Shellbuster" - 2021/06/04 Added bumped GTDB to v1.5.0 added soft ulimit f...