This is the extra data repository for UCSCXenaShiny project. All datasets are obtained either from public database UCSC Xena/GDC portal, or publications. The datasets are cleaned and stored in RData format and most regarding data source can be obtained by `attr(obj, "data_source)"` in R. If you use the data in your academic project, please cite regarding data source and our project paper: Wang, S.; Xiong, Y.; Gu, K.; Zhao, L.; Li, Y.; Zhao, F.; Li, X.; Liu, X. UCSCXenaShiny: An R Package for Exploring and Analyzing UCSC Xena Public Datasets in Web Browser. Preprints 2020, 2020070179 (doi: 10.20944/preprints202007.0179.v1).Datasets added in this new version: 1. Drug response (IC50) data and corresponding expression data for CCLE cell lines...
The Pan-Cancer Analysis of Whole Genomes (PCAWG) project generated a vast amount of whole-genome can...
ICGE: an R package for detecting relevant clusters and atypical units in gene expressio
Summary: The R453Plus1Toolbox is an R/Bioconductor package for the analysis of 454 Sequencing data. ...
This is the extra data repository for UCSCXenaShiny project. All datasets are obtained either from p...
Stemformatics is an established gene expression data portal containing over 420 public gene expressi...
This submission contains several R data objects that are part of the R package HumanDEU available th...
The data included in this record constituted the input for the case study reported in the manuscript...
Every week we screen the WHO International Clinical Trials Registry Platform (ICTRP) to identify and...
UCbase 2.0 (http://ucbase.unimore.it) is an update, extension and evolution of UCbase, a Web tool de...
This dataset includes the harmonised version of all The Cancer Genome Atlas (TCGA) RNA-Seq data (33 ...
UCbase 2.0 (http://ucbase.unimore.it) is an update, extension and evolution of UCbase, a Web tool de...
All data was downloaded from UCSC Xena on 16 August 2016. The compressed folder includes the followi...
This dataset contains data files and analysis code associated with manuscript entitled "Parallel rev...
UHNBreast PharmacoSet (PSet) generated by ORCESTRA. Metadata can be found on ORCESTRA at: http://orc...
The Cancer Genome Atlas Project (TCGA) is a National Cancer Institute effort to profile at least 500...
The Pan-Cancer Analysis of Whole Genomes (PCAWG) project generated a vast amount of whole-genome can...
ICGE: an R package for detecting relevant clusters and atypical units in gene expressio
Summary: The R453Plus1Toolbox is an R/Bioconductor package for the analysis of 454 Sequencing data. ...
This is the extra data repository for UCSCXenaShiny project. All datasets are obtained either from p...
Stemformatics is an established gene expression data portal containing over 420 public gene expressi...
This submission contains several R data objects that are part of the R package HumanDEU available th...
The data included in this record constituted the input for the case study reported in the manuscript...
Every week we screen the WHO International Clinical Trials Registry Platform (ICTRP) to identify and...
UCbase 2.0 (http://ucbase.unimore.it) is an update, extension and evolution of UCbase, a Web tool de...
This dataset includes the harmonised version of all The Cancer Genome Atlas (TCGA) RNA-Seq data (33 ...
UCbase 2.0 (http://ucbase.unimore.it) is an update, extension and evolution of UCbase, a Web tool de...
All data was downloaded from UCSC Xena on 16 August 2016. The compressed folder includes the followi...
This dataset contains data files and analysis code associated with manuscript entitled "Parallel rev...
UHNBreast PharmacoSet (PSet) generated by ORCESTRA. Metadata can be found on ORCESTRA at: http://orc...
The Cancer Genome Atlas Project (TCGA) is a National Cancer Institute effort to profile at least 500...
The Pan-Cancer Analysis of Whole Genomes (PCAWG) project generated a vast amount of whole-genome can...
ICGE: an R package for detecting relevant clusters and atypical units in gene expressio
Summary: The R453Plus1Toolbox is an R/Bioconductor package for the analysis of 454 Sequencing data. ...