Added Add support for AMR annotation. Update database parsing to allow BUSCO-based USCGs. Changed Sequences with no terminal repeats will be flagged with No terminal repeats, as Linear can be misleading. Print the number of plasmids and viruses in the summary module. Set click.rich_click.MAX_WIDTH to None. Reduce the default --sensitivity to 4.0. Update README.md to version 1.3.0. Fixed Set prog_name in click.version_option
This is a bug fix release. There was a typo in the SQL used for counting annotations in version 0.2.
The pipeline bacannot, is a customisable, easy to use, pipeline that uses state-of-the-art software ...
Identifying and characterizing mobile genetic elements in sequencing data is essential for understan...
Added Dockerfile for version 1.0.0. Sequence class: add support for str in __eq__. Sequence class: ...
Changed Mention the Zenodo upload of geNomad's database in README.md. Add the following sentence fo...
Changed Update numba (>=0.57) and numpy (>=1.21) version requirements. Use casefold for sequence co...
Added Mention Docker and the NMDC EDGE implementation in the README.md. Add the --min-plasmid-hallm...
Added Display a progress bar showing the progress of the classification process in nn-classificatio...
Fixed Replace np.warnings with warnings to add compatibility with numpy >= 1.24
Fixed Check if find-proviruses was executed when counting the number of sequences in the score-cali...
Changed Given that geNomad applies a minimum score filter (since version 1.4.0), the help dialogue ...
Fixed Fix a bug in score-calibration that happened when find-proviruses was executed but no proviru...
Marker database used by geNomad for virus and plasmid identification. genomad_db_v1.0.tar.gz: MMs...
The pipeline bacannot, is a customisable, easy to use, pipeline that uses state-of-the-art software...
This release fixes: Correct version is now reported with --version (only works with cloned source: g...
This is a bug fix release. There was a typo in the SQL used for counting annotations in version 0.2.
The pipeline bacannot, is a customisable, easy to use, pipeline that uses state-of-the-art software ...
Identifying and characterizing mobile genetic elements in sequencing data is essential for understan...
Added Dockerfile for version 1.0.0. Sequence class: add support for str in __eq__. Sequence class: ...
Changed Mention the Zenodo upload of geNomad's database in README.md. Add the following sentence fo...
Changed Update numba (>=0.57) and numpy (>=1.21) version requirements. Use casefold for sequence co...
Added Mention Docker and the NMDC EDGE implementation in the README.md. Add the --min-plasmid-hallm...
Added Display a progress bar showing the progress of the classification process in nn-classificatio...
Fixed Replace np.warnings with warnings to add compatibility with numpy >= 1.24
Fixed Check if find-proviruses was executed when counting the number of sequences in the score-cali...
Changed Given that geNomad applies a minimum score filter (since version 1.4.0), the help dialogue ...
Fixed Fix a bug in score-calibration that happened when find-proviruses was executed but no proviru...
Marker database used by geNomad for virus and plasmid identification. genomad_db_v1.0.tar.gz: MMs...
The pipeline bacannot, is a customisable, easy to use, pipeline that uses state-of-the-art software...
This release fixes: Correct version is now reported with --version (only works with cloned source: g...
This is a bug fix release. There was a typo in the SQL used for counting annotations in version 0.2.
The pipeline bacannot, is a customisable, easy to use, pipeline that uses state-of-the-art software ...
Identifying and characterizing mobile genetic elements in sequencing data is essential for understan...
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