[3.3] - 2021-07-29 Enhancements & fixes Updated pipeline template to nf-core/tools 2.1 [#556] - Genome index isn't recreated with --additional_fasta unless --star_index false [#668] - Salmon quant with UMI-tools does not work [#674] - Launch pipeline regex fails Software dependencies Note, since the pipeline is now using Nextflow DSL2, each process will be run with its own Biocontainer. This means that on occasion it is entirely possible for the pipeline to be using different versions of the same tool. However, the overall software dependency changes compared to the last release have been listed below for reference. Dependency Old version New version samtools 1.10 1.12 stringtie 2.1.4 2.1.7 umi_tools 1.1.1 1.1.2 NB: Dependenc...
[2.1] - 2021-06-15 Enhancements & fixes Removed workflow to download data from public databases in ...
The usage of the pipeline has been updated. It is recommended to reads the usage.md document. Added ...
[3.12.0] - 2023-06-02 Credits Special thanks to the following for their contributions to the release...
[3.10] - 2022-12-21 Enhancements & fixes Bump minimum Nextflow version from 21.10.3 -> 22.10.1 Upda...
[3.4] - 2021-10-05 Enhancements & fixes Software version(s) will now be reported for every module i...
[3.7] - 2022-05-03 :warning: Major enhancements Updated default STAR version to latest available (2...
[3.1] - 2021-05-13 :warning: Major enhancements Samplesheet format has changed from group,replicate...
[3.9] - 2022-09-30 Enhancements & fixes [#746] - Add tin.py output to MultiQC report [#841] - Turn ...
[3.0] - 2020-12-15 :warning: Major enhancements You will need to install Nextflow >=20.11.0-edge to...
[3.11.0] - 2023-03-30 Credits Special thanks to the following for their code contributions to the re...
[2.5] - 2022-07-13 Enhancements & fixes Default Nextclade dataset shipped with the pipeline has bee...
[3.5] - 2021-12-17 Enhancements & fixes Port pipeline to the updated Nextflow DSL2 syntax adopted o...
[2.0.0] - 2021-11-26 Major enhancements Pipeline has been re-implemented in Nextflow DSL2 Software ...
[3.1] - 2022-01-20 Enhancements & fixes Updated pipeline template to nf-core/tools 2.2 [#71] - Bump...
Initial release of nf-core/rnaseq! This release marks the point where the pipeline was moved from S...
[2.1] - 2021-06-15 Enhancements & fixes Removed workflow to download data from public databases in ...
The usage of the pipeline has been updated. It is recommended to reads the usage.md document. Added ...
[3.12.0] - 2023-06-02 Credits Special thanks to the following for their contributions to the release...
[3.10] - 2022-12-21 Enhancements & fixes Bump minimum Nextflow version from 21.10.3 -> 22.10.1 Upda...
[3.4] - 2021-10-05 Enhancements & fixes Software version(s) will now be reported for every module i...
[3.7] - 2022-05-03 :warning: Major enhancements Updated default STAR version to latest available (2...
[3.1] - 2021-05-13 :warning: Major enhancements Samplesheet format has changed from group,replicate...
[3.9] - 2022-09-30 Enhancements & fixes [#746] - Add tin.py output to MultiQC report [#841] - Turn ...
[3.0] - 2020-12-15 :warning: Major enhancements You will need to install Nextflow >=20.11.0-edge to...
[3.11.0] - 2023-03-30 Credits Special thanks to the following for their code contributions to the re...
[2.5] - 2022-07-13 Enhancements & fixes Default Nextclade dataset shipped with the pipeline has bee...
[3.5] - 2021-12-17 Enhancements & fixes Port pipeline to the updated Nextflow DSL2 syntax adopted o...
[2.0.0] - 2021-11-26 Major enhancements Pipeline has been re-implemented in Nextflow DSL2 Software ...
[3.1] - 2022-01-20 Enhancements & fixes Updated pipeline template to nf-core/tools 2.2 [#71] - Bump...
Initial release of nf-core/rnaseq! This release marks the point where the pipeline was moved from S...
[2.1] - 2021-06-15 Enhancements & fixes Removed workflow to download data from public databases in ...
The usage of the pipeline has been updated. It is recommended to reads the usage.md document. Added ...
[3.12.0] - 2023-06-02 Credits Special thanks to the following for their contributions to the release...