information-artifact-ontology/ontology-metadata: February 2023 release

monarch-initiative/SEPIO-ontology: February 2023 release 2

Matthew Brush
Nico Matentzoglu
Chris Mungall
tnavatar
Kent Shefchek
Melissa Haendel

February 2023

What's Changed Fixing some dashboard bugs by @matentzn in https://github.com/monarch-initiative/SEP...

monarch-initiative/phenio: 2023-07-11

Harry Caufield
Nico Matentzoglu

July 2023

What's Changed Update repo for ODK changes; produce relation graph by @caufieldjh in https://github...

INCATools/ontology-access-kit: v0.1.49

Chris Mungall
Harshad
Patrick Kalita
Charles Tapley Hoyt
Sujay Patil
marcin p. joachimiak
Joe Flack
Deepak
Sierra Moxon
Harry Caufield
Jules Jacobsen
Justin Reese
Nico Matentzoglu
Nomi Harris
Shawn Tan

October 2022

What's Changed Split annotate_text and annotate_file by @hrshdhgd in https://github.com/INCATools/o...

information-artifact-ontology/ontology-metadata: February 2023 release

jie zheng
Nico Matentzoglu
Nicole Vasilevsky
Chris Mungall
Alan Ruttenberg
James A. Overton
David Osumi-Sutherland
Charles Tapley Hoyt
Melanie Courtot

February 2023

What's Changed Create annotation_properties.tsv for APs moving forward by @matentzn in https://gith...

information-artifact-ontology/ontology-metadata: May 2023 release

Nico Matentzoglu
jie zheng
Charles Tapley Hoyt
Nicole Vasilevsky
Chris Mungall
Alan Ruttenberg
James A. Overton
David Osumi-Sutherland
Melanie Courtot

May 2023

What's Changed Add some synonym types by @cthoyt in https://github.com/information-artifact-ontolog...

information-artifact-ontology/ontology-metadata: July 2023 Release

Nico Matentzoglu
jie zheng
Charles Tapley Hoyt
Nicole Vasilevsky
Chris Mungall
Alan Ruttenberg
James A. Overton
David Osumi-Sutherland
Melanie Courtot

July 2023

What's Changed Add previous name synonym type by @cthoyt in https://github.com/information-artifact...

information-artifact-ontology/ontology-metadata: August 2023 Release

Nico Matentzoglu
jie zheng
Charles Tapley Hoyt
Nicole Vasilevsky
Chris Mungall
Alan Ruttenberg
James A. Overton
David Osumi-Sutherland
Melanie Courtot

August 2023

What's Changed Add obsolescence reason for "domain entity does not exist" by @matentzn in https://g...

information-artifact-ontology/ontology-metadata: June 2023 Release

Nico Matentzoglu
jie zheng
Charles Tapley Hoyt
Nicole Vasilevsky
Chris Mungall
Alan Ruttenberg
James A. Overton
David Osumi-Sutherland
Melanie Courtot

June 2023

What's Changed Add new synonym types for misnomer and misspelling by @cthoyt in https://github.com/...

pato-ontology/pato: February 2023 release

Shawn Tan
Nicole Vasilevsky
Nico Matentzoglu
Chris Mungall
David Osumi-Sutherland
Anita Caron
reality
Wasila Dahdul
Clare Pilgrim
Ray Stefancsik
Kai Blumberg
Jim Balhoff
Harshad
Sofia Robb
Melissa Haendel
Pier Luigi Buttigieg
Sebastian Köhler
diatomsRcool
Erik Segerdell
Ramona Walls
Austin Meier
Midori Harris
Robert Hoehndorf
Tom Gillespie
euniceyi
George Gkoutos
Sue Bello

February 2023

Full Changelog: https://github.com/pato-ontology/pato/compare/v2022-12-15...v2023-02-17 Mostly migra...

EnvironmentOntology/environmental-exposure-ontology: February 2023 release

Lauren
Chris Mungall
Nico Matentzoglu
diatomsRcool
Bill Duncan
Nicole Vasilevsky
Julie McMurry
Nomi Harris

February 2023

What's Changed MRE updates, maternal exposures by @laurenechan in https://github.com/EnvironmentOnt...

monarch-initiative/SEPIO-ontology: February 2023 release

Matthew Brush
Nico Matentzoglu
Chris Mungall
tnavatar
Kent Shefchek
Melissa Haendel

February 2023

What's Changed Migrate SEPIO to ODK 1.4 by @matentzn in https://github.com/monarch-initiative/SEPIO...

EnvironmentOntology/environmental-exposure-ontology: August 2022 Release

Lauren
Chris Mungall
Nico Matentzoglu
diatomsRcool
Bill Duncan
Nicole Vasilevsky
Julie McMurry
Nomi Harris

August 2022

What's Changed Update exo_import.owl by @laurenechan in https://github.com/EnvironmentOntology/envi...

pato-ontology/pato: 2022-05-20 release

Shawn Tan
Chris Mungall
Nico Matentzoglu
Nicole Vasilevsky
David Osumi-Sutherland
Anita Caron
reality
Wasila Dahdul
Kai Blumberg
Jim Balhoff
Clare72
Sofia Robb
Melissa Haendel
Midori Harris
Pier Luigi Buttigieg
Sebastian Köhler
diatomsRcool
Ramona Walls
Austin Meier
Robert Hoehndorf
Tom Gillespie
euniceyi
George Gkoutos
Sue Bello

May 2022

What's Changed Test version of 1.3.0 by @matentzn in https://github.com/pato-ontology/pato/pull/474...

pato-ontology/pato: August 2022 - Release 2

Shawn Tan
Nicole Vasilevsky
Nico Matentzoglu
Chris Mungall
David Osumi-Sutherland
Anita Caron
reality
Wasila Dahdul
Kai Blumberg
Jim Balhoff
Clare72
Harshad
Sofia Robb
Melissa Haendel
Pier Luigi Buttigieg
Ray Stefancsik
Sebastian Köhler
diatomsRcool
Erik Segerdell
Ramona Walls
Austin Meier
Midori Harris
Robert Hoehndorf
Tom Gillespie
euniceyi
George Gkoutos
Sue Bello

August 2022

What's Changed update import by @matentzn in https://github.com/pato-ontology/pato/pull/525 Update ...

obophenotype/bio-attribute-ontology: 2022-05-06 Release

Chris Mungall
Ray Stefancsik
Nico Matentzoglu
uberon
kallia-p
Meghan Balk
paolaroncaglia
Dan Keith
Jim Balhoff
diatomsRcool
Charles Tapley Hoyt
Melissa Haendel
Nicole Vasilevsky

May 2022

What's Changed Add disease_onset.tsv by @rays22 in https://github.com/obophenotype/bio-attribute-on...

monarch-initiative/SEPIO-ontology: February 2023 release 2

Matthew Brush
Nico Matentzoglu
Chris Mungall
tnavatar
Kent Shefchek
Melissa Haendel

February 2023

What's Changed Fixing some dashboard bugs by @matentzn in https://github.com/monarch-initiative/SEP...

monarch-initiative/phenio: 2023-07-11

Harry Caufield
Nico Matentzoglu

July 2023

What's Changed Update repo for ODK changes; produce relation graph by @caufieldjh in https://github...

INCATools/ontology-access-kit: v0.1.49

Chris Mungall
Harshad
Patrick Kalita
Charles Tapley Hoyt
Sujay Patil
marcin p. joachimiak
Joe Flack
Deepak
Sierra Moxon
Harry Caufield
Jules Jacobsen
Justin Reese
Nico Matentzoglu
Nomi Harris
Shawn Tan

October 2022

What's Changed Split annotate_text and annotate_file by @hrshdhgd in https://github.com/INCATools/o...

information-artifact-ontology/ontology-metadata: February 2023 release

jie zheng
Nico Matentzoglu
Nicole Vasilevsky
Chris Mungall
Alan Ruttenberg
James A. Overton
David Osumi-Sutherland
Charles Tapley Hoyt
Melanie Courtot

February 2023

What's Changed Create annotation_properties.tsv for APs moving forward by @matentzn in https://gith...

information-artifact-ontology/ontology-metadata: May 2023 release

Nico Matentzoglu
jie zheng
Charles Tapley Hoyt
Nicole Vasilevsky
Chris Mungall
Alan Ruttenberg
James A. Overton
David Osumi-Sutherland
Melanie Courtot

May 2023

What's Changed Add some synonym types by @cthoyt in https://github.com/information-artifact-ontolog...

information-artifact-ontology/ontology-metadata: July 2023 Release

Nico Matentzoglu
jie zheng
Charles Tapley Hoyt
Nicole Vasilevsky
Chris Mungall
Alan Ruttenberg
James A. Overton
David Osumi-Sutherland
Melanie Courtot

July 2023

What's Changed Add previous name synonym type by @cthoyt in https://github.com/information-artifact...

information-artifact-ontology/ontology-metadata: August 2023 Release

Nico Matentzoglu
jie zheng
Charles Tapley Hoyt
Nicole Vasilevsky
Chris Mungall
Alan Ruttenberg
James A. Overton
David Osumi-Sutherland
Melanie Courtot

August 2023

What's Changed Add obsolescence reason for "domain entity does not exist" by @matentzn in https://g...

information-artifact-ontology/ontology-metadata: June 2023 Release

Nico Matentzoglu
jie zheng
Charles Tapley Hoyt
Nicole Vasilevsky
Chris Mungall
Alan Ruttenberg
James A. Overton
David Osumi-Sutherland
Melanie Courtot

June 2023

What's Changed Add new synonym types for misnomer and misspelling by @cthoyt in https://github.com/...

pato-ontology/pato: February 2023 release

Shawn Tan
Nicole Vasilevsky
Nico Matentzoglu
Chris Mungall
David Osumi-Sutherland
Anita Caron
reality
Wasila Dahdul
Clare Pilgrim
Ray Stefancsik
Kai Blumberg
Jim Balhoff
Harshad
Sofia Robb
Melissa Haendel
Pier Luigi Buttigieg
Sebastian Köhler
diatomsRcool
Erik Segerdell
Ramona Walls
Austin Meier
Midori Harris
Robert Hoehndorf
Tom Gillespie
euniceyi
George Gkoutos
Sue Bello

February 2023

Full Changelog: https://github.com/pato-ontology/pato/compare/v2022-12-15...v2023-02-17 Mostly migra...

EnvironmentOntology/environmental-exposure-ontology: February 2023 release

Lauren
Chris Mungall
Nico Matentzoglu
diatomsRcool
Bill Duncan
Nicole Vasilevsky
Julie McMurry
Nomi Harris

February 2023

What's Changed MRE updates, maternal exposures by @laurenechan in https://github.com/EnvironmentOnt...

monarch-initiative/SEPIO-ontology: February 2023 release

Matthew Brush
Nico Matentzoglu
Chris Mungall
tnavatar
Kent Shefchek
Melissa Haendel

February 2023

What's Changed Migrate SEPIO to ODK 1.4 by @matentzn in https://github.com/monarch-initiative/SEPIO...

EnvironmentOntology/environmental-exposure-ontology: August 2022 Release

Lauren
Chris Mungall
Nico Matentzoglu
diatomsRcool
Bill Duncan
Nicole Vasilevsky
Julie McMurry
Nomi Harris

August 2022

What's Changed Update exo_import.owl by @laurenechan in https://github.com/EnvironmentOntology/envi...

pato-ontology/pato: 2022-05-20 release

Shawn Tan
Chris Mungall
Nico Matentzoglu
Nicole Vasilevsky
David Osumi-Sutherland
Anita Caron
reality
Wasila Dahdul
Kai Blumberg
Jim Balhoff
Clare72
Sofia Robb
Melissa Haendel
Midori Harris
Pier Luigi Buttigieg
Sebastian Köhler
diatomsRcool
Ramona Walls
Austin Meier
Robert Hoehndorf
Tom Gillespie
euniceyi
George Gkoutos
Sue Bello

May 2022

What's Changed Test version of 1.3.0 by @matentzn in https://github.com/pato-ontology/pato/pull/474...

pato-ontology/pato: August 2022 - Release 2

Shawn Tan
Nicole Vasilevsky
Nico Matentzoglu
Chris Mungall
David Osumi-Sutherland
Anita Caron
reality
Wasila Dahdul
Kai Blumberg
Jim Balhoff
Clare72
Harshad
Sofia Robb
Melissa Haendel
Pier Luigi Buttigieg
Ray Stefancsik
Sebastian Köhler
diatomsRcool
Erik Segerdell
Ramona Walls
Austin Meier
Midori Harris
Robert Hoehndorf
Tom Gillespie
euniceyi
George Gkoutos
Sue Bello

August 2022

What's Changed update import by @matentzn in https://github.com/pato-ontology/pato/pull/525 Update ...

obophenotype/bio-attribute-ontology: 2022-05-06 Release

Chris Mungall
Ray Stefancsik
Nico Matentzoglu
uberon
kallia-p
Meghan Balk
paolaroncaglia
Dan Keith
Jim Balhoff
diatomsRcool
Charles Tapley Hoyt
Melissa Haendel
Nicole Vasilevsky

May 2022

What's Changed Add disease_onset.tsv by @rays22 in https://github.com/obophenotype/bio-attribute-on...

monarch-initiative/SEPIO-ontology: February 2023 release 2

Matthew Brush
Nico Matentzoglu
Chris Mungall
tnavatar
Kent Shefchek
Melissa Haendel

February 2023

What's Changed Fixing some dashboard bugs by @matentzn in https://github.com/monarch-initiative/SEP...

monarch-initiative/phenio: 2023-07-11

Harry Caufield
Nico Matentzoglu

July 2023

What's Changed Update repo for ODK changes; produce relation graph by @caufieldjh in https://github...

INCATools/ontology-access-kit: v0.1.49

Chris Mungall
Harshad
Patrick Kalita
Charles Tapley Hoyt
Sujay Patil
marcin p. joachimiak
Joe Flack
Deepak
Sierra Moxon
Harry Caufield
Jules Jacobsen
Justin Reese
Nico Matentzoglu
Nomi Harris
Shawn Tan

October 2022

What's Changed Split annotate_text and annotate_file by @hrshdhgd in https://github.com/INCATools/o...

information-artifact-ontology/ontology-metadata: February 2023 release

Abstract

Extracted data

information-artifact-ontology/ontology-metadata: February 2023 release

Abstract

Extracted data

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