- Code and example data used for the manuscript "Subcellular spatially resolved gene neighborhood networks in single cells" - Example raw data for multiplexed seqFISH in mesenchymal stem cells - Example processed seqFISH - Raw downloaded MERFISH data and example processed data The original published MERFISH can be found in the following links: http://zhuang.harvard.edu/merfish.html https://figshare.com/articles/dataset/Bento_spatial_AnnData_formatted_datasets/15109236/
This repository contains spatial gene expression data for reproducing analysis results of spage2vec ...
Spatial localization is a key determinant of cellular fate and behavior, but spatial RNA assays trad...
This is an example data set of spatially resolved single cell RNA-seq from the anterior region of sa...
Spatial transcriptomics extends single-cell RNA sequencing (scRNA-seq) by providing spatial context ...
We prepared these datasets associated with the paper “Spatially resolved epigenomic profiling of sin...
A new paper in Science by Zhuang and colleagues introduces multiplexed error-robust FISH (MERFISH). ...
Properties of all cells measured with MERFISH provided as a csv file. “Cell ID” is a unique ID assoc...
Properties of all cells measured with MERFISH provided as a csv file. “Cell ID” is a unique ID assoc...
Spatial localization is a key determinant of cellular fate and behavior, but methods for spatially r...
MERFISH (multiplexed error-robust fluorescence in situ hybridization) is a single-cell transcriptomi...
Supplementary processed data. The raw microscopy data are not uploaded owing to their large size (2....
Determining spatial patterns in gene expression is crucial for understanding physiological function...
This repository contains example input data, including raw images, codebooks, parameters, and segme...
This repository contains example input data, including raw images, codebooks, parameters, and segme...
We recently applied multiplexed seqFISH to profile expressions of hundreds of genes at the single-ce...
This repository contains spatial gene expression data for reproducing analysis results of spage2vec ...
Spatial localization is a key determinant of cellular fate and behavior, but spatial RNA assays trad...
This is an example data set of spatially resolved single cell RNA-seq from the anterior region of sa...
Spatial transcriptomics extends single-cell RNA sequencing (scRNA-seq) by providing spatial context ...
We prepared these datasets associated with the paper “Spatially resolved epigenomic profiling of sin...
A new paper in Science by Zhuang and colleagues introduces multiplexed error-robust FISH (MERFISH). ...
Properties of all cells measured with MERFISH provided as a csv file. “Cell ID” is a unique ID assoc...
Properties of all cells measured with MERFISH provided as a csv file. “Cell ID” is a unique ID assoc...
Spatial localization is a key determinant of cellular fate and behavior, but methods for spatially r...
MERFISH (multiplexed error-robust fluorescence in situ hybridization) is a single-cell transcriptomi...
Supplementary processed data. The raw microscopy data are not uploaded owing to their large size (2....
Determining spatial patterns in gene expression is crucial for understanding physiological function...
This repository contains example input data, including raw images, codebooks, parameters, and segme...
This repository contains example input data, including raw images, codebooks, parameters, and segme...
We recently applied multiplexed seqFISH to profile expressions of hundreds of genes at the single-ce...
This repository contains spatial gene expression data for reproducing analysis results of spage2vec ...
Spatial localization is a key determinant of cellular fate and behavior, but spatial RNA assays trad...
This is an example data set of spatially resolved single cell RNA-seq from the anterior region of sa...