ICB-DCM/pyPESTO: pyPESTO 0.2.5

Objectives: New Aesara objectve (#623, #629, #635) Sampling: New Emcee sampler (#606) Fix compatibility to new Theano version (#650) Storage: Improve hdf5 storage documentation (#612) Hdf5 history for MultiProcessEngine (#650) Minor fixes (#637, #638, #645, #649) Visualization: Fix bounds of parameter plots (#601) Fix waterfall plots with multiple results (#611) CI: Move CI tests on GitHub Actions to python 3.9 (#598) Add issue template (#604) Update BionetGen Link (#630) Introduce project.toml (#634) General: Introduce progress bar for optimization, profiles and ensembles (#641) Extend gradient checking functionality (#644) Minor fixes: Fix installation of ipopt (#599) Fix Zenodo link (#601) Fix duplicates in documentation (#603) Fix least squares optimizers (#617 #631 #632) Fix trust region options (#616) Fix slicing for new AMICI release (#621) Refactor and document latin hypercube sampling (#647) Fix missing SBML name in PEtab import (#648