CliMA/Oceananigans.jl: v0.53.2

Oceananigans v0.53.2 Diff since v0.53.1 Closed issues: Ability to run in hydrostatic mode. (#72) Upgrade to single/unified stretched vertical grid spacing 3D elliptic solver? (#211) Setup with DifferentialEquations.jl time steppers? (#391) Checkpointer fails if boundary condition is a CuArray (#420) Avoid need for data in user-interaction with fields through dispatch on Colon indices (#458) More friendly error messages when types are passed to Model instead of objects (#465) Non-trivial bathymetry (#530) Free surface (#580) Compressible atmospheric model (#605) Architecture struct should hold thread-block layout information (#624) Functions common to many submodules should be defined at top-level (#641) Value and gradient boundary conditions cannot be set with a stretched grid (#667) Internal wave verification experiment (#674) User interface for adding topography/boundaries (#694) Documentation of vertically-stretched grid notation (#696) Simulation does not stop at stop_iteration, in general (#702) Making it easier to set up and configure scripts with checkpointing on clusters with time limits (#779) Translate fill_halo_regions kernels to KernelAbstractions kernel language (#811) NetCDFOutputWriter constructor fails if attributes or dimensions are not specified (#885) Fill halo regions in set!(model, ...)? (#1150) Abstraction for domains tilted with respect to gravitational_acceleration (#1151) Convert at least one or two examples to use NetCDF (#1157) Add documentation section on how to run tests (#1176) Sponge layer not behaving as expected (#1203) Buildkite for both pull requests and pushes? (#1263) about Halo point (#1286) Adapt cell_advection_timescale for ShallowWaterModel (#1307) GPU architecture and plan_forward_transform (#1317) Rename Bickley_jet_shallow_water to shallow_water_Bickley_jet? (#1470) Triggers tagbot to register update to v0.53.1 (#1473) shallow water on GPUs (#1477) Merged pull requests: Support for tilting gravity (#1242) (@ali-ramadhan) Conformal cubed sphere (#1417) (@ali-ramadhan) Distributed shallow water model (#1430) (@ali-ramadhan) Flux boundary conditions for HydrostaticFreeSurfaceModel and barotropic gyre validation experiment (#1433) (@glwagner) Improved fill_halo_regions (#1444) (@glwagner) CompatHelper: bump compat for "MPI" to "0.17" (#1472) (@github-actions[bot]) CompatHelper: add new compat entry for "CubedSphere" at version "0.1" (#1474) (@github-actions[bot]) CompatHelper: add new compat entry for "Rotations" at version "1.0" (#1475) (@github-actions[bot]) Changing the name to shallow water Bickley jet (#1476) (@francispoulin) Revert "Improved fill_halo_regions" (#1484) (@ali-ramadhan) Generalizes budget tests for Flux boundary conditions to every topology and boundary (#1486) (@glwagner) Some bug fixes for VerticallyStretchedGrids (#1487) (@tomchor