This dataset contains: A set of text files from running the tool Nanopolish eventalign on several nanopore direct RNA sequencing data sets produced by Jay Hesselberth's lab at the University of Colorado (BioProject accession number PRJNA910992), as well as external sequencing data sets from PMID: 34893601 (synthetic oligonucleotides from Leger et al) and PMID: 35252946 (yeast rRNA data from Stephenson et al). "Sequencing summary" files produced by MinKNOW, from nanopore sequencing of yeast mRNA and synthetic RNA oligos in the Hesselberth lab. We analyze these files in an associated manuscript to determine the "end status" of each read during the sequencing run. These files can be used as inputs to the R markdown documents at https://g...
Before RNA can be sequenced using next generation sequencing (NGS) technologies, it is first convert...
Background: Comprehensive annotation and quantification of transcriptomes are outstanding problems i...
The covalent modification of RNA molecules is a pervasive feature of all classes of RNAs and has fun...
This dataset contains: A set of text files from running the tool Nanopolish eventalign on several...
This dataset contains a set of text files from running the tool Nanopolish eventalign on several nan...
Curs 2017-2018The advent of Oxford Nanopore Technologies is expected to play a pivotal role in near ...
The direct RNA sequencing platform offered by Oxford Nanopore Technologies allows for direct measure...
Transcriptome is a word that describes the information contained in all the RNAs in a cell or cell p...
RNA sequencing (RNA-seq) is a high-throughput method by which the sequence of each RNA molecule in a...
Genome-wide sequencing of RNA (RNA-seq) has become an inexpensive tool to gain key insights into cel...
Massively parallel sequencing has rapidly revolutionized DNA and RNA research. Sample preparations a...
Current advances in sequencing technology have led to an exponential growth of omics data. To levera...
This work describes advances in nanopore sequencing technology as they apply to RNA. RNAs in the cel...
This work involves using native RNA nanopore sequencing to directly characterize the transcriptome o...
textabstractStandard RNA expression profiling methods rely on enrichment steps for specific RNA clas...
Before RNA can be sequenced using next generation sequencing (NGS) technologies, it is first convert...
Background: Comprehensive annotation and quantification of transcriptomes are outstanding problems i...
The covalent modification of RNA molecules is a pervasive feature of all classes of RNAs and has fun...
This dataset contains: A set of text files from running the tool Nanopolish eventalign on several...
This dataset contains a set of text files from running the tool Nanopolish eventalign on several nan...
Curs 2017-2018The advent of Oxford Nanopore Technologies is expected to play a pivotal role in near ...
The direct RNA sequencing platform offered by Oxford Nanopore Technologies allows for direct measure...
Transcriptome is a word that describes the information contained in all the RNAs in a cell or cell p...
RNA sequencing (RNA-seq) is a high-throughput method by which the sequence of each RNA molecule in a...
Genome-wide sequencing of RNA (RNA-seq) has become an inexpensive tool to gain key insights into cel...
Massively parallel sequencing has rapidly revolutionized DNA and RNA research. Sample preparations a...
Current advances in sequencing technology have led to an exponential growth of omics data. To levera...
This work describes advances in nanopore sequencing technology as they apply to RNA. RNAs in the cel...
This work involves using native RNA nanopore sequencing to directly characterize the transcriptome o...
textabstractStandard RNA expression profiling methods rely on enrichment steps for specific RNA clas...
Before RNA can be sequenced using next generation sequencing (NGS) technologies, it is first convert...
Background: Comprehensive annotation and quantification of transcriptomes are outstanding problems i...
The covalent modification of RNA molecules is a pervasive feature of all classes of RNAs and has fun...