This major update add new functionalities to pycoQC and improve a number of existing ones: BAM files parsing 8 new alignment specific plots Updated json format including alignment information when available Option to filter out duplicated reads due to Guppy over-calling (--filter_duplicated) New tool to split summary sequencing file by barcodes Improve HTML report layout and add list of source files at the end Update documentation and demo notebooks Add Codacity integratio
New Features qsv: now using a tiled aligner rather than BLAT. qio: seven new package are created, ...
General improvement of logging message output Implement fancy color logger Add position tracking wit...
Summary: Current sequence alignment browsers allow visualization of large and complex next-generatio...
This new version is a major disruptive package update not retro compatible with previous released ve...
Fix minor bugs Improve documentation Update test datasets Include draft of paper to be submitted to ...
Rewrite argparse including better handling of input file regex Rewrite doc with mkdocs. Add method...
pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report genera...
This release contains a first prototype of command line interface generating a beautiful HTML report...
Re-factoring, update to extract more info from Albacore 2.0+ and add extra options for plot
pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report genera...
This release is mainly a fix for promethion flowcells for which pycoQC used to generate massive repo...
This release include minor text edits for the JOSS paper. We also added a gitter chatroo
Adding multi Fast5 support to Fast5_to_seq_summary #49 thanks to @snajder-r contribution Made Fast5_...
New Modules: DeDup - New module! DeDup: Improved Duplicate Removal for merged/collapsed reads in an...
MultiQC updates Major spruce of the command line help, using the new rich-click package Drop some o...
New Features qsv: now using a tiled aligner rather than BLAT. qio: seven new package are created, ...
General improvement of logging message output Implement fancy color logger Add position tracking wit...
Summary: Current sequence alignment browsers allow visualization of large and complex next-generatio...
This new version is a major disruptive package update not retro compatible with previous released ve...
Fix minor bugs Improve documentation Update test datasets Include draft of paper to be submitted to ...
Rewrite argparse including better handling of input file regex Rewrite doc with mkdocs. Add method...
pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report genera...
This release contains a first prototype of command line interface generating a beautiful HTML report...
Re-factoring, update to extract more info from Albacore 2.0+ and add extra options for plot
pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report genera...
This release is mainly a fix for promethion flowcells for which pycoQC used to generate massive repo...
This release include minor text edits for the JOSS paper. We also added a gitter chatroo
Adding multi Fast5 support to Fast5_to_seq_summary #49 thanks to @snajder-r contribution Made Fast5_...
New Modules: DeDup - New module! DeDup: Improved Duplicate Removal for merged/collapsed reads in an...
MultiQC updates Major spruce of the command line help, using the new rich-click package Drop some o...
New Features qsv: now using a tiled aligner rather than BLAT. qio: seven new package are created, ...
General improvement of logging message output Implement fancy color logger Add position tracking wit...
Summary: Current sequence alignment browsers allow visualization of large and complex next-generatio...