rdkit/rdkit: 2021_09_5 (Q3 2021) Release

Release_2021.09.5 (Changes relative to Release_2021.09.4) Acknowledgements Kevin Burk, Niels Kristian Kjærgård Madsen, Dan Nealschneider, Steve Roughley, Ricardo Rodriguez-Schmidt, Paolo Tosco, Kazuya Ujihara, Fabio Urbina, Riccardo Vianello, Maciej Wójcikowski, yuri@FreeBSD Bug Fixes: GetSimilarityMapFromWeights changes behavior of parameter "colorMap" depending on whether the parameter "draw2d" is provided or not (github #4763 from FabioUrbina) Missing dependency on RDKit::RingDecomposerLib_static in RDKit::GraphMol_static (github #4875 from nielskm) cannot parse coordinate bonds from CXSMARTS (github #4878 from greglandrum) update MD5 for the comicneue font (github #4885 from greglandrum) fix some leaks in the SWIG wrappers (github #4916 from greglandrum) Fix i-files for RDK_USE_BOOST_IOSTREAMS=OFF (github #4933 from kazuyaujihara) Fails on i386: non-constant-expression cannot be narrowed from type 'unsigned int' to 'npy_intp' (aka 'int') in initializer list (github #4934 from yurivict) Fix SWIG wrappers for C# (github #4935 from kazuyaujihara) fix CMakeLists.txt extracting link line from python LDSHARED config var (github #4954 from rvianello) add JavaGzStreamTests (github #4973 from kazuyaujihara) Invalid SMARTS generated by MolToSmarts (github #4981 from nielskm) Transform3D#SetRotation() around arbitrary axis scales coordinates (github #4995 from sroughley) Bad handling of dummy atoms in the CIP assignment code (github #4996 from greglandrum) Bad handling of fragments in CIP code (github #4998 from greglandrum) Drawing query atoms containing an AND query raises an exception (github #5006 from ptosco) Fix warning when generating coordinates for ZOBs (github #5011 from d-b-w) Code in the docstring for FindMolChiralCenters() doesn't work (github #5014 from greglandrum) Drop gist_qmol_ops in upgrade scripts in case it exists (github #5021 from mwojcikowski) Remove extra newline from Kekulize error message. (github #5022 from xavierholt) Neighboring Hs not taken into account in connectivity invariants (github #5036 from greglandrum) To INCHI conversion leaks on kekulization failure (github #5057 from ricrogz