Only compute FIM when sensitivities are available (#194). Fix documentation build (#197). Add support for pyswarm optimizer (#198). Run travis tests for documentation and notebooks only on pull requests (#199)
Python Fix simplification for pysb models (#1168) Pass verbosity flags to pysb network generation (...
Update to amici 0.11.19 for scaled residual support (#491) Add links for online execution of noteboo...
Add typehints to global functions and classes. Add PetabImporter.rdatas_to_simulation_df function (a...
Implement multi process parallelization engine for optimization. Introduce PrePostProcessor to more ...
New Optimizers: FIDES (#506, #503 # 500) NLopt (#493) Extended PEtab support: PySB import (#437)...
Example Notebook for prior functionality (#438) Changed parameter indexing in profiling routines (#4...
Major Modularize import, to import optimization, sampling and profiling separately (#413) Minor B...
Finite Differences: Adaptive finite differences (#671) Add helper function for checking gradients o...
Rewrite AmiciObjective and PetabAmiciObjective simulation routine to directly use amici.petab_object...
Objective Write solver settings to stream to enable serialization for distributed systems (#308) Re...
Import AMICI (https://github.com/ICB-DCM/AMICI/) models and the PEtab (https://github.com/ICB-DCM/PE...
Objectives: New Aesara objectve (#623, #629, #635) Sampling: New Emcee sampler (#606) Fix compat...
Tidy up and speed up tests (#265 and others). Basic self-implemented Adaptive Metropolis and Adaptiv...
Update CI test system: latest Ubuntu, python 3.8, simplify R build (#296). Add weights logging to ad...
Objective: Basic finite differences (#666) Fix factor 2 in res/fval values (#619) Optimization: ...
Python Fix simplification for pysb models (#1168) Pass verbosity flags to pysb network generation (...
Update to amici 0.11.19 for scaled residual support (#491) Add links for online execution of noteboo...
Add typehints to global functions and classes. Add PetabImporter.rdatas_to_simulation_df function (a...
Implement multi process parallelization engine for optimization. Introduce PrePostProcessor to more ...
New Optimizers: FIDES (#506, #503 # 500) NLopt (#493) Extended PEtab support: PySB import (#437)...
Example Notebook for prior functionality (#438) Changed parameter indexing in profiling routines (#4...
Major Modularize import, to import optimization, sampling and profiling separately (#413) Minor B...
Finite Differences: Adaptive finite differences (#671) Add helper function for checking gradients o...
Rewrite AmiciObjective and PetabAmiciObjective simulation routine to directly use amici.petab_object...
Objective Write solver settings to stream to enable serialization for distributed systems (#308) Re...
Import AMICI (https://github.com/ICB-DCM/AMICI/) models and the PEtab (https://github.com/ICB-DCM/PE...
Objectives: New Aesara objectve (#623, #629, #635) Sampling: New Emcee sampler (#606) Fix compat...
Tidy up and speed up tests (#265 and others). Basic self-implemented Adaptive Metropolis and Adaptiv...
Update CI test system: latest Ubuntu, python 3.8, simplify R build (#296). Add weights logging to ad...
Objective: Basic finite differences (#666) Fix factor 2 in res/fval values (#619) Optimization: ...
Python Fix simplification for pysb models (#1168) Pass verbosity flags to pysb network generation (...
Update to amici 0.11.19 for scaled residual support (#491) Add links for online execution of noteboo...
Add typehints to global functions and classes. Add PetabImporter.rdatas_to_simulation_df function (a...
DOI
Add to ORKG