Ensembles/Sampling: General ensemble analysis, visualization, storage (#557, #565, #568) Calculate and plot MCMC parameter and prediction CIs via ensemble definition, parallelize ensemble predictions (#490) Optimization: New optimizer: SciPy Differential Evolution (#543) Set fides default to hybrid (#578) AMICI: Make guess_steadystate less restrictive (#561) and have a more intuitive default behavior (#562, #582) Customize time points (#490) Storage: Save HDF5 history with SingleCoreEngine (#564) Add read/write function for whole results (#589) Engines: MPI based distributed parallelization (#542) Visualization: Speed up waterfall plots by resizing scales only once (#577) Change waterfall default offset to 1 - minimum (#593)...
Speed up multivariate normal multiple sampling (#299). Set default value for OMP_NUM_THREADS=1, stop...
Update branch name master -> main in agreement with https://github.com/github/renaming (#406). Noteb...
Ensemble simulations from the weather and climate model COSMO. The data has been used for model veri...
Objective: Basic finite differences (#666) Fix factor 2 in res/fval values (#619) Optimization: ...
Objective Write solver settings to stream to enable serialization for distributed systems (#308) Re...
Ensembles: Added standard deviation to ensemble prediction plots (#853) Storage Distinguish betwee...
New Optimizers: FIDES (#506, #503 # 500) NLopt (#493) Extended PEtab support: PySB import (#437)...
Example Notebook for prior functionality (#438) Changed parameter indexing in profiling routines (#4...
Tidy up and speed up tests (#265 and others). Basic self-implemented Adaptive Metropolis and Adaptiv...
Sampler: Allow redis dynamical sampler to only wait for relevant particles after a generatio, givin...
Major Modularize import, to import optimization, sampling and profiling separately (#413) Minor B...
Fixed ensemble simulation copy() set_models_path now also work with zipped ensembles legend can be d...
## Data For each measured combination of the confidence and system size, there is one gzipped file....
Allowing per-model mutations Improvements in plotting Filters now also work with states Bugfixe
Linear post-processing approaches are proposed and fundamental mechanisms are analyzed by which the ...
Speed up multivariate normal multiple sampling (#299). Set default value for OMP_NUM_THREADS=1, stop...
Update branch name master -> main in agreement with https://github.com/github/renaming (#406). Noteb...
Ensemble simulations from the weather and climate model COSMO. The data has been used for model veri...
Objective: Basic finite differences (#666) Fix factor 2 in res/fval values (#619) Optimization: ...
Objective Write solver settings to stream to enable serialization for distributed systems (#308) Re...
Ensembles: Added standard deviation to ensemble prediction plots (#853) Storage Distinguish betwee...
New Optimizers: FIDES (#506, #503 # 500) NLopt (#493) Extended PEtab support: PySB import (#437)...
Example Notebook for prior functionality (#438) Changed parameter indexing in profiling routines (#4...
Tidy up and speed up tests (#265 and others). Basic self-implemented Adaptive Metropolis and Adaptiv...
Sampler: Allow redis dynamical sampler to only wait for relevant particles after a generatio, givin...
Major Modularize import, to import optimization, sampling and profiling separately (#413) Minor B...
Fixed ensemble simulation copy() set_models_path now also work with zipped ensembles legend can be d...
## Data For each measured combination of the confidence and system size, there is one gzipped file....
Allowing per-model mutations Improvements in plotting Filters now also work with states Bugfixe
Linear post-processing approaches are proposed and fundamental mechanisms are analyzed by which the ...
Speed up multivariate normal multiple sampling (#299). Set default value for OMP_NUM_THREADS=1, stop...
Update branch name master -> main in agreement with https://github.com/github/renaming (#406). Noteb...
Ensemble simulations from the weather and climate model COSMO. The data has been used for model veri...