JWST Calibration Pipeline

What's Changed JP-2984: Update ASN rules for NIS_WFSS to keep grisms separate by @hbushouse in https://github.com/spacetelescope/jwst/pull/7351 (JP-2991) Require asdf-transform-schemas greater than 0.3.0 by @dmggh in https://github.com/spacetelescope/jwst/pull/7352 JP-3006 Remove defaulting of the is_psf column by @stscieisenhamer in https://github.com/spacetelescope/jwst/pull/7356 use pip instead of conda to install certifi, to solve pip freeze issue by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/7355 Fix recently updated regression test by @hbushouse in https://github.com/spacetelescope/jwst/pull/7357 Update user documentation by @cshanahan1 in https://github.com/spacetelescope/jwst/pull/6919 (JP-3002) Add SUB400X256ALWB subarray to NIRCam allowed values by @dmggh in https://github.com/spacetelescope/jwst/pull/7361 JP-3012: Add note for install issue on Mojave by @tapastro in https://github.com/spacetelescope/jwst/pull/7360 Wrong Python version expected in init.py by @gruselhaus in https://github.com/spacetelescope/jwst/pull/7366 remove CRDS PUB server from test by @nden in https://github.com/spacetelescope/jwst/pull/7368 Cache CRDS_PATH reffile contents in CI workflows by @jdavies-st in https://github.com/spacetelescope/jwst/pull/7333 Add test for duplicate data when resaving model to fits by @braingram in https://github.com/spacetelescope/jwst/pull/7358 Add missing change log entry for stcal update by @hbushouse in https://github.com/spacetelescope/jwst/pull/7364 JP-2802: Fix a bug in the definition of NIRSpec resampled WCS by @mcara in https://github.com/spacetelescope/jwst/pull/7359 use ruff in place of flake8 by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/7054 Replace getch with readchar in okify_regtests by @jdavies-st in https://github.com/spacetelescope/jwst/pull/7371 (JP-3007) Add keywords for source RA and Dec for WFSS extractions. by @dmggh in https://github.com/spacetelescope/jwst/pull/7372 JP-3009: Add cleanups for files left behind while running tests by @WilliamJamieson in https://github.com/spacetelescope/jwst/pull/7375 make tests requiring opencv conditional by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/7377 JP-2988: Update ramp_fit tests for change in saturation flag propagation by @kmacdonald-stsci in https://github.com/spacetelescope/jwst/pull/7363 JP-2998 Extract1D using custom json files by @jemorrison in https://github.com/spacetelescope/jwst/pull/7369 JP-2900 Redux : Sort combine1d wavelength array prior to creation of spectral wcs by @tapastro in https://github.com/spacetelescope/jwst/pull/7374 expand CI matrix to test more Python versions by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/7378 JP-2912: Store offsets for WFSS source contamination correction in subarray metadata by @tapastro in https://github.com/spacetelescope/jwst/pull/7343 JP-2969: Fix MOS handling of source IDs by @hbushouse in https://github.com/spacetelescope/jwst/pull/7379 JP-3020 Pin PRD versions for tests that are not testing changes in PRD by @stscieisenhamer in https://github.com/spacetelescope/jwst/pull/7380 JP-2807: Update ATOCA algorithm by @tapastro in https://github.com/spacetelescope/jwst/pull/6945 consolidate duplicated job blocks into include: in initial test matrix by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/7382 Fix associations ListCategory enum bug by @jdavies-st in https://github.com/spacetelescope/jwst/pull/7370 Update deprecation notice to name the CRDS_PATH variable appropriately by @stscieisenhamer in https://github.com/spacetelescope/jwst/pull/7392 rebase on top of documentation commits pushed to release branches by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/7394 JP-3019: Remove code trimming zero-valued cube planes by @drlaw1558 in https://github.com/spacetelescope/jwst/pull/7391 JP-3014: Updating CI tests for new NaN values for invalid data in STCAL ramp fitting. by @kmacdonald-stsci in https://github.com/spacetelescope/jwst/pull/7389 Rollback stpipe version in setup by @hbushouse in https://github.com/spacetelescope/jwst/pull/7399 JP-3030: Update slit model to include var_flat by @jemorrison in https://github.com/spacetelescope/jwst/pull/7397 Rollforward stpipe version in setup by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/7400 Use log instead of print in tweakreg by @mcara in https://github.com/spacetelescope/jwst/pull/7402 JP-3034: Change import for photutils CircularAnnulus by @hbushouse in https://github.com/spacetelescope/jwst/pull/7407 Fix incorrect deallocation attempts of unallocated memory in cube builder by @mcara in https://github.com/spacetelescope/jwst/pull/7408 fix deprecation warnings introduced by Pytest 7.2 by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/7325 JP-2013 Fix NIRSpec IFU NOD background subtract and include leakcal in the Level2 associations by @stscieisenhamer in https://github.com/spacetelescope/jwst/pull/7405 JP-2921: Add FITS WCS keywords to WFSS mode by @nden in https://github.com/spacetelescope/jwst/pull/7373 JP-3028 Do not clobber reprocessing lists when Level 2 rules are operating on 'c' type candidates by @stscieisenhamer in https://github.com/spacetelescope/jwst/pull/7410 run coverage in parallel by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/7411 test opencv functionality separately by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/7414 replace usages of np.int() with int() by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/7403 Update NIRSpec MOS regtests with flight data by @hbushouse in https://github.com/spacetelescope/jwst/pull/7413 update reference values for approximation test after GWCS SIP fit change by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/7415 Merge the two update_wcsinfo functions into one by @mcara in https://github.com/spacetelescope/jwst/pull/7412 Pin tweakwcs version to 0.8.1 and update tweakreg unit test by @mcara in https://github.com/spacetelescope/jwst/pull/7417 move scripts into subpackage so that they can be packaged with entry_points.console_scripts by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/7406 release procedures for JWST 1.9.0 / DMS build B9.1rc1 by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/7416 New Contributors @gruselhaus made their first contribution in https://github.com/spacetelescope/jwst/pull/7366 Full Changelog: https://github.com/spacetelescope/jwst/compare/1.8.5...1.9.0If you use this software in your work, please cite it using the following metadata