PredictiveEcology/reproducible: v1.0.0

Known issues: https://github.com/PredictiveEcology/reproducible/issues version 1.0.0 New features This version is not backwards-compatible out of the box. To maintain backwards compatibility, set: options("reproducible.useDBI" = FALSE) A new backend was introduced that uses DBI package directly, without archivist. This has much improved speed. New option: options("reproducible.cacheSaveFormat"). This can be either rds (default) or qs. All cached objects will be saved with this format. Previously it was rda. Cache objects can now be saved with with qs::qsave. In many cases, this has much improved speed and file sizes compared to rds; however, testing across a wide range of conditions will occur before it becomes the default. Changed default behaviour for memoising ... because Cache is now much faster, the default is to turn memoising off, via options("reproducible.useMemoise" = FALSE). In cases of large objects, memoising should still be faster, so user can still activate it, setting the option to TRUE. Much better SQLite database handling for concurrent write attempts. Tested with dozens of write attempts per second by 3 cores with abundant locked database occurrences. postProcess arg useGDAL can now take "force" as the default behaviour is to not use GDAL if the problem can fit into RAM and sf or raster tools will be faster than GDAL tools useCloud argument in Cache and family has slightly modified functionality (see ?Cache new section useCloud) and now has more tests including edge cases, such as useCloud = TRUE, useCache = 'overwrite'. The cloud version now will also follow the "overwrite" command. Dependency changes deprecating archivist; moved to Suggests. removed imports for bitops, dplyr, fasterize, flock, git2r, lubridate, RcppArmadillo, RCurl and tidyselect. Some of these went to Suggests. bug fixes postProcess calls that use GDAL made more robust (including #93). Several minor, edge cases were detected and fixed