xPore is a Python package for identification and quantification of differential RNA modifications from direct RNA sequencing. The detailed usage is documented at https://xpore.readthedocs.io/en/latest, while all scripts and source code are available at https://github.com/GoekeLab/xpore. All the preprocessed datasets used in the paper are provided here. Please cite our paper below when using these data. Ploy N. Pratanwanich et al. "Detection of differential RNA modifications from direct RNA sequencing of human cell lines." bioRxiv (2020)
Massively parallel sequencing has rapidly revolutionized DNA and RNA research. Sample preparations a...
In this thesis I focus on the application of bioinformatics to analyze RNA. The type of experimental...
<p>The total RNA was extracted from FFPE peritumoral tissues using Qiagen RNA extraction kit for FFP...
xPore is a Python package for identification and quantification of differential RNA modifications fr...
xPore is a Python package for identification and quantification of differential RNA modifications fr...
xPore is a Python package for identification and quantification of differential RNA modifications fr...
xPore is a Python package for identification and quantification of differential RNA modifications fr...
Ribosomal RNAs are decorated by numerous post-transcriptional modifications whose exact roles in rib...
RNA molecules undergo a vast array of chemical post-transcriptional modifications (PTMs) that can af...
<p>Alternative mRNA processing can result in the generation of multiple, qualitatively different RNA...
The catalytically active component of ribosomes, rRNA, is long studied and heavily modified. However...
In the past few decades, bioinformatics has become an important part of medical research, providing ...
RNA modifications exist in all kingdom of life. Several different types of base or ribose modificati...
My thesis focuses on the investigation and characterization of RNA modifications. RNA is post-transc...
RNA A-to-I editing; carried out by the family of adenosine deaminase acting on RNA (ADAR) proteins, ...
Massively parallel sequencing has rapidly revolutionized DNA and RNA research. Sample preparations a...
In this thesis I focus on the application of bioinformatics to analyze RNA. The type of experimental...
<p>The total RNA was extracted from FFPE peritumoral tissues using Qiagen RNA extraction kit for FFP...
xPore is a Python package for identification and quantification of differential RNA modifications fr...
xPore is a Python package for identification and quantification of differential RNA modifications fr...
xPore is a Python package for identification and quantification of differential RNA modifications fr...
xPore is a Python package for identification and quantification of differential RNA modifications fr...
Ribosomal RNAs are decorated by numerous post-transcriptional modifications whose exact roles in rib...
RNA molecules undergo a vast array of chemical post-transcriptional modifications (PTMs) that can af...
<p>Alternative mRNA processing can result in the generation of multiple, qualitatively different RNA...
The catalytically active component of ribosomes, rRNA, is long studied and heavily modified. However...
In the past few decades, bioinformatics has become an important part of medical research, providing ...
RNA modifications exist in all kingdom of life. Several different types of base or ribose modificati...
My thesis focuses on the investigation and characterization of RNA modifications. RNA is post-transc...
RNA A-to-I editing; carried out by the family of adenosine deaminase acting on RNA (ADAR) proteins, ...
Massively parallel sequencing has rapidly revolutionized DNA and RNA research. Sample preparations a...
In this thesis I focus on the application of bioinformatics to analyze RNA. The type of experimental...
<p>The total RNA was extracted from FFPE peritumoral tissues using Qiagen RNA extraction kit for FFP...