Publication date
December 2020
DOIAbstract
Stable release of the pipelines (see changelog). Main fixes related to guess of strandness of the reads, seg fault with star for bacterial genomes
Stable release of the pipelines (see changelog). Main fixes related to guess of strandness of the reads, seg fault with star for bacterial genomes
RNAseq workflow is now called mRNA-seq added noncoding-RNA-seq workflow added STARsolo mode to scRNA...
RNA-seq data analysis pipelines are generally composed of sequence alignment, expression quantificat...
Bug Fixes: Fixed a crash when collecting GC statistics for some bams Fixed a syntax error present i...
Stable release of the pipelines (see changelog). Main fixes related to guess of strandness of the re...
Major update following new tools available in sequana. Some new features: salmon for eukaryotes fas...
What's Changed Fix strand balance automatic selection bug by @cokelaer in https://github.com/sequan...
This release adds the "--genomeChrBinNbits" parameter to STAR for the genome index generation step. ...
What's Changed Fix options not used in star_mapping by @cokelaer in https://github.com/sequana/rnas...
v1.0.0 is released, to coincide with the bioRxiv preprint. We add support for variant calling with o...
Automated preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, a...
Sargasso can now disambiguate RNA-seq reads created from mixtures of more than two species. Speed im...
Mapping of large sets of high-throughput sequencing reads to a reference genome is one of the founda...
2.4.2 (2022-12-02) Bug Fixes fix gene-level p-value adjustment (use Benjamini-Hochberg instead of B...
What's Changed refactorisation to include containers and latest wrappers Full Changelog: https://g...
2.5.0 (2023-05-13) Features Support for 3-prime RNA sequencing (#62) (c06c573) Bug Fixes fix rep...
RNAseq workflow is now called mRNA-seq added noncoding-RNA-seq workflow added STARsolo mode to scRNA...
RNA-seq data analysis pipelines are generally composed of sequence alignment, expression quantificat...
Bug Fixes: Fixed a crash when collecting GC statistics for some bams Fixed a syntax error present i...
Stable release of the pipelines (see changelog). Main fixes related to guess of strandness of the re...
Major update following new tools available in sequana. Some new features: salmon for eukaryotes fas...
What's Changed Fix strand balance automatic selection bug by @cokelaer in https://github.com/sequan...
This release adds the "--genomeChrBinNbits" parameter to STAR for the genome index generation step. ...
What's Changed Fix options not used in star_mapping by @cokelaer in https://github.com/sequana/rnas...
v1.0.0 is released, to coincide with the bioRxiv preprint. We add support for variant calling with o...
Automated preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, a...
Sargasso can now disambiguate RNA-seq reads created from mixtures of more than two species. Speed im...
Mapping of large sets of high-throughput sequencing reads to a reference genome is one of the founda...
2.4.2 (2022-12-02) Bug Fixes fix gene-level p-value adjustment (use Benjamini-Hochberg instead of B...
What's Changed refactorisation to include containers and latest wrappers Full Changelog: https://g...
2.5.0 (2023-05-13) Features Support for 3-prime RNA sequencing (#62) (c06c573) Bug Fixes fix rep...
RNAseq workflow is now called mRNA-seq added noncoding-RNA-seq workflow added STARsolo mode to scRNA...
RNA-seq data analysis pipelines are generally composed of sequence alignment, expression quantificat...
Bug Fixes: Fixed a crash when collecting GC statistics for some bams Fixed a syntax error present i...
Add to ORKG