What's Changed FIX: Fix default memory issue with gatk4/createsequencedictionary by @maxulysse in https://github.com/nf-core/sarek/pull/1087 Fix ascat manual test by @asp8200 in https://github.com/nf-core/sarek/pull/1093 FIX: Mutect2 subworkflow by @maxulysse in https://github.com/nf-core/sarek/pull/1098 FIX: Deepvariant duplicate index by @maxulysse in https://github.com/nf-core/sarek/pull/1100 FIX: Remove params.tracedir by @maxulysse in https://github.com/nf-core/sarek/pull/1105 FEAT: Add slack notification for megatests by @maxulysse in https://github.com/nf-core/sarek/pull/1106 Remove redundant index computation for MD & version for MD Spark by @FriederikeHanssen in https://github.com/nf-core/sarek/pull/1101 update config by @maxulyss...
First release within nf-core Compliant within all nf-core requirements One script to rule them ...
Fix singularity.autoMounts issue (#48) Use correct tag for annotation containers (#49) Fix paths for...
What's Changed Fix Vep plugin usage by @BarryDigby in https://github.com/nf-core/sarek/pull/688 Fix...
What's Changed Back to business on dev by @maxulysse in https://github.com/nf-core/sarek/pull/762...
What's Changed CHORES: back to dev by @maxulysse in https://github.com/nf-core/sarek/pull/1073 f...
What's Changed Release 3.1.2 by @maxulysse in https://github.com/nf-core/sarek/pull/906 Full Ch...
What's Changed Syn up dev by @maxulysse in https://github.com/nf-core/sarek/pull/849 Remove "Non...
What's Changed FIX: Remove public_aws_ecr profile by @maxulysse in https://github.com/nf-core/sarek...
What's Changed Fix MapReads caching bug by @BrunoGrandePhD in https://github.com/nf-core/sarek/pull...
Add GATK Spark possibilities (#76) Add CNVkit (#153) Add MSIsensor (#163) Improve support for minima...
What's Changed Fix usage of intervals in samtools/mpileup by @nickhsmith in https://github.com/nf-c...
Update GATK from 4.1.6.0 to 4.1.7.0 (#214) Fix channels collision between Freebayes and Mutect2 (#21...
Add mouse (GRCm38) support (#52) Add minimal support for minimal genome (only fasta or fasta + known...
Porting to DSL2 Use CRAM files where possible Add new tools: DragMap, DeepVariant, Joint germline ca...
Add UMI annotation and consensus functionality to Sarek (#145) Add ignore_soft_clipped_bases option ...
First release within nf-core Compliant within all nf-core requirements One script to rule them ...
Fix singularity.autoMounts issue (#48) Use correct tag for annotation containers (#49) Fix paths for...
What's Changed Fix Vep plugin usage by @BarryDigby in https://github.com/nf-core/sarek/pull/688 Fix...
What's Changed Back to business on dev by @maxulysse in https://github.com/nf-core/sarek/pull/762...
What's Changed CHORES: back to dev by @maxulysse in https://github.com/nf-core/sarek/pull/1073 f...
What's Changed Release 3.1.2 by @maxulysse in https://github.com/nf-core/sarek/pull/906 Full Ch...
What's Changed Syn up dev by @maxulysse in https://github.com/nf-core/sarek/pull/849 Remove "Non...
What's Changed FIX: Remove public_aws_ecr profile by @maxulysse in https://github.com/nf-core/sarek...
What's Changed Fix MapReads caching bug by @BrunoGrandePhD in https://github.com/nf-core/sarek/pull...
Add GATK Spark possibilities (#76) Add CNVkit (#153) Add MSIsensor (#163) Improve support for minima...
What's Changed Fix usage of intervals in samtools/mpileup by @nickhsmith in https://github.com/nf-c...
Update GATK from 4.1.6.0 to 4.1.7.0 (#214) Fix channels collision between Freebayes and Mutect2 (#21...
Add mouse (GRCm38) support (#52) Add minimal support for minimal genome (only fasta or fasta + known...
Porting to DSL2 Use CRAM files where possible Add new tools: DragMap, DeepVariant, Joint germline ca...
Add UMI annotation and consensus functionality to Sarek (#145) Add ignore_soft_clipped_bases option ...
First release within nf-core Compliant within all nf-core requirements One script to rule them ...
Fix singularity.autoMounts issue (#48) Use correct tag for annotation containers (#49) Fix paths for...
What's Changed Fix Vep plugin usage by @BarryDigby in https://github.com/nf-core/sarek/pull/688 Fix...