What's Changed CHORES: back to dev by @maxulysse in https://github.com/nf-core/sarek/pull/1073 fix typo in profile name by @maxulysse in https://github.com/nf-core/sarek/pull/1079 FIX: update bgziptabix module by @maxulysse in https://github.com/nf-core/sarek/pull/1078 CHORES: Prepare release 3.2.1 by @maxulysse in https://github.com/nf-core/sarek/pull/1080 FIX: patch more modules by @maxulysse in https://github.com/nf-core/sarek/pull/1082 Release candidate 3.2.1 by @maxulysse in https://github.com/nf-core/sarek/pull/1081 Full Changelog: https://github.com/nf-core/sarek/compare/3.2.0...3.2.
Add mouse (GRCm38) support (#52) Add minimal support for minimal genome (only fasta or fasta + known...
What's Changed Noisyv2 by @simeonreusch in https://github.com/simeonreusch/ztfparsnip/pull/1 versio...
What's Changed Fix Vep plugin usage by @BarryDigby in https://github.com/nf-core/sarek/pull/688 Fix...
What's Changed Release 3.1.2 by @maxulysse in https://github.com/nf-core/sarek/pull/906 Full Ch...
What's Changed Syn up dev by @maxulysse in https://github.com/nf-core/sarek/pull/849 Remove "Non...
What's Changed FIX: Fix default memory issue with gatk4/createsequencedictionary by @maxulysse in h...
What's Changed Back to business on dev by @maxulysse in https://github.com/nf-core/sarek/pull/762...
What's Changed FIX: Remove public_aws_ecr profile by @maxulysse in https://github.com/nf-core/sarek...
What's Changed Fix usage of intervals in samtools/mpileup by @nickhsmith in https://github.com/nf-c...
What's Changed Fix MapReads caching bug by @BrunoGrandePhD in https://github.com/nf-core/sarek/pull...
Add GATK Spark possibilities (#76) Add CNVkit (#153) Add MSIsensor (#163) Improve support for minima...
Fix singularity.autoMounts issue (#48) Use correct tag for annotation containers (#49) Fix paths for...
What's Changed Important! Template update for nf-core/tools v2.8 by @nf-core-bot in https://github....
First release within nf-core Compliant within all nf-core requirements One script to rule them ...
Add UMI annotation and consensus functionality to Sarek (#145) Add ignore_soft_clipped_bases option ...
Add mouse (GRCm38) support (#52) Add minimal support for minimal genome (only fasta or fasta + known...
What's Changed Noisyv2 by @simeonreusch in https://github.com/simeonreusch/ztfparsnip/pull/1 versio...
What's Changed Fix Vep plugin usage by @BarryDigby in https://github.com/nf-core/sarek/pull/688 Fix...
What's Changed Release 3.1.2 by @maxulysse in https://github.com/nf-core/sarek/pull/906 Full Ch...
What's Changed Syn up dev by @maxulysse in https://github.com/nf-core/sarek/pull/849 Remove "Non...
What's Changed FIX: Fix default memory issue with gatk4/createsequencedictionary by @maxulysse in h...
What's Changed Back to business on dev by @maxulysse in https://github.com/nf-core/sarek/pull/762...
What's Changed FIX: Remove public_aws_ecr profile by @maxulysse in https://github.com/nf-core/sarek...
What's Changed Fix usage of intervals in samtools/mpileup by @nickhsmith in https://github.com/nf-c...
What's Changed Fix MapReads caching bug by @BrunoGrandePhD in https://github.com/nf-core/sarek/pull...
Add GATK Spark possibilities (#76) Add CNVkit (#153) Add MSIsensor (#163) Improve support for minima...
Fix singularity.autoMounts issue (#48) Use correct tag for annotation containers (#49) Fix paths for...
What's Changed Important! Template update for nf-core/tools v2.8 by @nf-core-bot in https://github....
First release within nf-core Compliant within all nf-core requirements One script to rule them ...
Add UMI annotation and consensus functionality to Sarek (#145) Add ignore_soft_clipped_bases option ...
Add mouse (GRCm38) support (#52) Add minimal support for minimal genome (only fasta or fasta + known...
What's Changed Noisyv2 by @simeonreusch in https://github.com/simeonreusch/ztfparsnip/pull/1 versio...
What's Changed Fix Vep plugin usage by @BarryDigby in https://github.com/nf-core/sarek/pull/688 Fix...