pydicom/pydicom: Pydicom v2.4.1

deephyper/deephyper: Changelog - DeepHyper 0.3.3

Romain Egele
Michael (Misha) Salim
Prasanna Balaprakash
Dipendra Jha
Kyle Gerard Felker
felixeperez
Joceran Gouneau
Matthieu Dorier
Romit Maulik
Bethany Lusch
rmjcs2020
Z223I
Zach
Hongyuan Liu
Shengli Jiang

October 2021

Now compatible with Python >=3.7, <3.10 Fixed log_dir argument in search Added logging for command l...

pycroscopy/pyUSID: 0.0.6.1

Suhas Somnath
CompPhysChris
ramav87

May 2019

Mainly a bug fix to ensure that HDF5 datasets are consistently and correctly loaded as Dask array

deeptools/HiCExplorer: The documentation release

Fidel Ramirez
Joachim Wolff
Björn Grüning
Vivek Bhardwaj
Gautier RICHARD
Devon Ryan
Friederike Dündar

April 2018

The second bug fix release of 2.1 includes: documentation improvements fixing broken Readthedocs d...

pydicom/pydicom: v2.4.1

Darcy Mason
scaramallion
mrbean-bremen
rhaxton
Jonathan Suever
Vanessasaurus
Dimitri Papadopoulos Orfanos
Guillaume Lemaitre
Aditya Panchal
Alex Rothberg
Markus D. Herrmann
Joan Massich
James Kerns
Korijn van Golen
Chris Bridge
Thomas Robitaille
Simon Biggs
moloney
Matthew Shun-Shin
Blair Conrad
pawelzajdel
Markus Mattes
YoungKi Lyu
Félix C. Morency
Zvi Baratz
Tim Cogan
Bernardo Pericacho Sánchez
Christian Clauss
Hans Meine
Joseph Wortmann

June 2023

Fix deepcopy of Dataset and Sequence (https://github.com/pydicom/pydicom/pull/1814

pydicom/pynetdicom: v2.0.2

scaramallion
patmun
amosonn
r1b
Dimitri Papadopoulos Orfanos
Steven Loria
Alex Rothberg
Ben Beasley
Martin Krämer
Victor Saase
edmcdonagh
Sasank Chilamkurthy
Andrew McGregor
Cody
Jon Pipitone
Jøger Hansegård
Karthikeyan Singaravelan
Matthew Self
Oliver Eidel
Rongcong Xu
Simon Biggs
Woonchan Cho
Yasushi Saito
kosh
moloney
mrbean-bremen
or150

April 2022

Fix received datasets not being written completely when using STORE_RECV_CHUNKED_DATASE

pydicom/pydicom: 1.2.1

Darcy Mason
scaramallion
rhaxton
mrbean-bremen
Jonathan Suever
Vanessa Sochat
Guillaume Lemaitre
Dimitri Papadopoulos Orfanos
Aditya Panchal
Joan Massich
Alex Rothberg
Korijn van Golen
James Kerns
Thomas Robitaille
Matthew Shun-Shin
moloney
pawelzajdel
Markus Mattes
Félix C. Morency
huicpc0207
Markus D. Herrmann
Kevin S. Hahn
Hans Meine
Jon Stutters
Ino de Bruijn
Eli Stevens
Daniel Barreto
Callan Bryant
Andrey Fedorov
Adam Klimont

November 2018

Minor update to 1.2 series to fix problems running under python 3.7.1 and python 3.6.

deepqmc/deepqmc: 1.0.1

Jan Hermann
Zeno Schätzle
szbernat
Krzysztof Maziarz
Huziel E. Sauceda
Adam Foster
Marc Brockschmidt

January 2023

Fixed Issues related to sampler initialization and synchronization with parameter update Minor issu...

physiopy/phys2bids: BIDS formatting of physiological recordings

Daniel Alcalá
Apoorva Ayyagari
Molly Bright
César Caballero Gaudes
Vicente Ferrer
Soichi Hayashi
Ross Markello
Stefano Moia
Rachael Stickland
Taylor Salo
Eneko Uruñuela
Kristina Zvolanek

November 2020

Bug Fix BlueprintInput deepcopies inputs at initialization #358 (@vinferrer) Authors: 1 Vicente F...

pydicom/pydicom: Pydicom v2.4.0

Darcy Mason
scaramallion
mrbean-bremen
rhaxton
Jonathan Suever
Vanessasaurus
Dimitri Papadopoulos Orfanos
Guillaume Lemaitre
Aditya Panchal
Alex Rothberg
Markus D. Herrmann
Joan Massich
James Kerns
Korijn van Golen
Thomas Robitaille
Simon Biggs
moloney
Chris Bridge
Matthew Shun-Shin
Blair Conrad
pawelzajdel
Markus Mattes
YoungKi Lyu
Félix C. Morency
Zvi Baratz
Tim Cogan
Bernardo Pericacho Sánchez
Christian Clauss
Hans Meine
Joseph Wortmann

June 2023

Various bug fixes and enhancements. See details below, or the release notes for a less detailed chan...

NYSCF Automated Deep Phenotyping Dataset

Migliori Bianca
Schiff Lauren
Chen Ye
Carter Deidre
Bonilla Caitlyn
Hall Jenna
Fan Minjie
Tam Edmund
Ahadi Sara
Fischbacher Brodie
Geraschenko Anton
Hunter Christopher J.
Venugopalan Subhashini
DesMarteau Sean
Narayanaswamy Arunachalam
Jacob Selwyn
Armstrong Zan
Ferrarotto Peter
Williams Brian
Buckley-Herd Geoff
Hazard Jon
Goldberg Jordan
Coram Marc
Otto Reid
Baltz Edward A.
Andres-Martin Laura
Pritchard Orion
Duren-Lubanski Alyssa
Daigavane Ameya
Reggio Kathryn
Global Stem Cell Array Team
Nelson Phillip C.
Frumkin Micheal
Solomon Susan L.
Bauer Lauren
Aiyar Raeka S.
Schwarzbacj Elizabeth
Noggle Scott A.
Monsma Frederick J.
Paull Daniel
Berndl Marc
Yang Samuel
Johannesson Bjarki

December 2021

NYSCF Automated Deep Phenotyping Dataset The data files required by this notebooks can be accessed ...

deeptools/HiCExplorer: fix chromosome names in python3

Fidel Ramirez
Joachim Wolff
Björn Grüning
Vivek Bhardwaj
Devon Ryan
Gautier RICHARD
Friederike Dündar

March 2018

This release fixes a problem related to python3 in which chromosome names were of bytes type

cangermueller/deepcpg 1.0.3

Christof Angermueller

April 2017

Extends dcpg_data.py, updates documentation, and fixes minor bugs. Extends dcpg_data.py to support ...

Dataset for "Deep Dive into the Verifiability of Code Generated by GitHub Copilot"

Ruohao Yin
Patrick Lam

April 2023

A collection of GitHub-Copilot-generated Python solutions and their translations to Dafny with verif...

Dataset for "MicrographCleaner: A python package for cryo-EM micrograph cleaning using deep learning"

Ruben Sanchez Garcia

June 2020

The dataset used for the Publicaton "MicrographCleaner: A python package for cryo-EM micrograph cle...

deeptools/HiCExplorer: Early 2019 3nd bug fix

Joachim Wolff
Fidel Ramirez
Björn Grüning
Vivek Bhardwaj
Gautier RICHARD
Devon Ryan
Jeroen Van Goey
Rungetf
Leily Rabbani
Friederike Dündar

March 2019

This bug fix release patches an issue with cooler files, hicBuildMatrix and the usage of a restricti...

deephyper/deephyper: Changelog - DeepHyper 0.3.3

Romain Egele
Michael (Misha) Salim
Prasanna Balaprakash
Dipendra Jha
Kyle Gerard Felker
felixeperez
Joceran Gouneau
Matthieu Dorier
Romit Maulik
Bethany Lusch
rmjcs2020
Z223I
Zach
Hongyuan Liu
Shengli Jiang

October 2021

Now compatible with Python >=3.7, <3.10 Fixed log_dir argument in search Added logging for command l...

pycroscopy/pyUSID: 0.0.6.1

Suhas Somnath
CompPhysChris
ramav87

May 2019

Mainly a bug fix to ensure that HDF5 datasets are consistently and correctly loaded as Dask array

deeptools/HiCExplorer: The documentation release

Fidel Ramirez
Joachim Wolff
Björn Grüning
Vivek Bhardwaj
Gautier RICHARD
Devon Ryan
Friederike Dündar

April 2018

The second bug fix release of 2.1 includes: documentation improvements fixing broken Readthedocs d...

pydicom/pydicom: v2.4.1

Darcy Mason
scaramallion
mrbean-bremen
rhaxton
Jonathan Suever
Vanessasaurus
Dimitri Papadopoulos Orfanos
Guillaume Lemaitre
Aditya Panchal
Alex Rothberg
Markus D. Herrmann
Joan Massich
James Kerns
Korijn van Golen
Chris Bridge
Thomas Robitaille
Simon Biggs
moloney
Matthew Shun-Shin
Blair Conrad
pawelzajdel
Markus Mattes
YoungKi Lyu
Félix C. Morency
Zvi Baratz
Tim Cogan
Bernardo Pericacho Sánchez
Christian Clauss
Hans Meine
Joseph Wortmann

June 2023

Fix deepcopy of Dataset and Sequence (https://github.com/pydicom/pydicom/pull/1814

pydicom/pynetdicom: v2.0.2

scaramallion
patmun
amosonn
r1b
Dimitri Papadopoulos Orfanos
Steven Loria
Alex Rothberg
Ben Beasley
Martin Krämer
Victor Saase
edmcdonagh
Sasank Chilamkurthy
Andrew McGregor
Cody
Jon Pipitone
Jøger Hansegård
Karthikeyan Singaravelan
Matthew Self
Oliver Eidel
Rongcong Xu
Simon Biggs
Woonchan Cho
Yasushi Saito
kosh
moloney
mrbean-bremen
or150

April 2022

Fix received datasets not being written completely when using STORE_RECV_CHUNKED_DATASE

pydicom/pydicom: 1.2.1

Darcy Mason
scaramallion
rhaxton
mrbean-bremen
Jonathan Suever
Vanessa Sochat
Guillaume Lemaitre
Dimitri Papadopoulos Orfanos
Aditya Panchal
Joan Massich
Alex Rothberg
Korijn van Golen
James Kerns
Thomas Robitaille
Matthew Shun-Shin
moloney
pawelzajdel
Markus Mattes
Félix C. Morency
huicpc0207
Markus D. Herrmann
Kevin S. Hahn
Hans Meine
Jon Stutters
Ino de Bruijn
Eli Stevens
Daniel Barreto
Callan Bryant
Andrey Fedorov
Adam Klimont

November 2018

Minor update to 1.2 series to fix problems running under python 3.7.1 and python 3.6.

deepqmc/deepqmc: 1.0.1

Jan Hermann
Zeno Schätzle
szbernat
Krzysztof Maziarz
Huziel E. Sauceda
Adam Foster
Marc Brockschmidt

January 2023

Fixed Issues related to sampler initialization and synchronization with parameter update Minor issu...

physiopy/phys2bids: BIDS formatting of physiological recordings

Daniel Alcalá
Apoorva Ayyagari
Molly Bright
César Caballero Gaudes
Vicente Ferrer
Soichi Hayashi
Ross Markello
Stefano Moia
Rachael Stickland
Taylor Salo
Eneko Uruñuela
Kristina Zvolanek

November 2020

Bug Fix BlueprintInput deepcopies inputs at initialization #358 (@vinferrer) Authors: 1 Vicente F...

pydicom/pydicom: Pydicom v2.4.0

Darcy Mason
scaramallion
mrbean-bremen
rhaxton
Jonathan Suever
Vanessasaurus
Dimitri Papadopoulos Orfanos
Guillaume Lemaitre
Aditya Panchal
Alex Rothberg
Markus D. Herrmann
Joan Massich
James Kerns
Korijn van Golen
Thomas Robitaille
Simon Biggs
moloney
Chris Bridge
Matthew Shun-Shin
Blair Conrad
pawelzajdel
Markus Mattes
YoungKi Lyu
Félix C. Morency
Zvi Baratz
Tim Cogan
Bernardo Pericacho Sánchez
Christian Clauss
Hans Meine
Joseph Wortmann

June 2023

Various bug fixes and enhancements. See details below, or the release notes for a less detailed chan...

NYSCF Automated Deep Phenotyping Dataset

Migliori Bianca
Schiff Lauren
Chen Ye
Carter Deidre
Bonilla Caitlyn
Hall Jenna
Fan Minjie
Tam Edmund
Ahadi Sara
Fischbacher Brodie
Geraschenko Anton
Hunter Christopher J.
Venugopalan Subhashini
DesMarteau Sean
Narayanaswamy Arunachalam
Jacob Selwyn
Armstrong Zan
Ferrarotto Peter
Williams Brian
Buckley-Herd Geoff
Hazard Jon
Goldberg Jordan
Coram Marc
Otto Reid
Baltz Edward A.
Andres-Martin Laura
Pritchard Orion
Duren-Lubanski Alyssa
Daigavane Ameya
Reggio Kathryn
Global Stem Cell Array Team
Nelson Phillip C.
Frumkin Micheal
Solomon Susan L.
Bauer Lauren
Aiyar Raeka S.
Schwarzbacj Elizabeth
Noggle Scott A.
Monsma Frederick J.
Paull Daniel
Berndl Marc
Yang Samuel
Johannesson Bjarki

December 2021

NYSCF Automated Deep Phenotyping Dataset The data files required by this notebooks can be accessed ...

deeptools/HiCExplorer: fix chromosome names in python3

Fidel Ramirez
Joachim Wolff
Björn Grüning
Vivek Bhardwaj
Devon Ryan
Gautier RICHARD
Friederike Dündar

March 2018

This release fixes a problem related to python3 in which chromosome names were of bytes type

cangermueller/deepcpg 1.0.3

Christof Angermueller

April 2017

Extends dcpg_data.py, updates documentation, and fixes minor bugs. Extends dcpg_data.py to support ...

Dataset for "Deep Dive into the Verifiability of Code Generated by GitHub Copilot"

Ruohao Yin
Patrick Lam

April 2023

A collection of GitHub-Copilot-generated Python solutions and their translations to Dafny with verif...

Dataset for "MicrographCleaner: A python package for cryo-EM micrograph cleaning using deep learning"

Ruben Sanchez Garcia

June 2020

The dataset used for the Publicaton "MicrographCleaner: A python package for cryo-EM micrograph cle...

deeptools/HiCExplorer: Early 2019 3nd bug fix

Joachim Wolff
Fidel Ramirez
Björn Grüning
Vivek Bhardwaj
Gautier RICHARD
Devon Ryan
Jeroen Van Goey
Rungetf
Leily Rabbani
Friederike Dündar

March 2019

This bug fix release patches an issue with cooler files, hicBuildMatrix and the usage of a restricti...

deephyper/deephyper: Changelog - DeepHyper 0.3.3

Romain Egele
Michael (Misha) Salim
Prasanna Balaprakash
Dipendra Jha
Kyle Gerard Felker
felixeperez
Joceran Gouneau
Matthieu Dorier
Romit Maulik
Bethany Lusch
rmjcs2020
Z223I
Zach
Hongyuan Liu
Shengli Jiang

October 2021

Now compatible with Python >=3.7, <3.10 Fixed log_dir argument in search Added logging for command l...

pycroscopy/pyUSID: 0.0.6.1

Suhas Somnath
CompPhysChris
ramav87

May 2019

Mainly a bug fix to ensure that HDF5 datasets are consistently and correctly loaded as Dask array

deeptools/HiCExplorer: The documentation release

Fidel Ramirez
Joachim Wolff
Björn Grüning
Vivek Bhardwaj
Gautier RICHARD
Devon Ryan
Friederike Dündar

April 2018

The second bug fix release of 2.1 includes: documentation improvements fixing broken Readthedocs d...

pydicom/pydicom: Pydicom v2.4.1

Abstract

Extracted data

pydicom/pydicom: Pydicom v2.4.1

Abstract

Extracted data

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