SysBioChalmers/Human-GEM: Human 1.8.0

  • Hao Wang
  • Jonathan Robinson
  • Mihail Anton
  • Cholley Pierre-Etienne
  • Pinar Kocabas
  • Jorge Ferreira
  • Pranas Grigaitis
Publication date
June 2021

Abstract

Main improvements in this PR: Style/Features (PR #270): replace rxns and mets fields in Human-GEM and annotation tsv files with respective MA ids, as planned in #265 regenerate metsNoComp column from MA met ids Fixes (PR #263): fix bug reported in #262, by removing quotes from spontaneous column in reactions.tsv add structure information of annotation tsv files to README Add test to the type of spontaneous in sanityCheck Fixes (PR #261): modify the subsystem annotation for the exchange reactions found in #255, by changing from Miscellaneous to Exchange/demand reactions Features (PR #258): add new reaction HMR_10133 of taurine synthesis from oxygenation of hypotaurine, as discussed in #257 the existing HMR_8759 and HMR_3911 appear to...

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