Main improvements in this PR: Style/Features (PR #270): replace rxns and mets fields in Human-GEM and annotation tsv files with respective MA ids, as planned in #265 regenerate metsNoComp column from MA met ids Fixes (PR #263): fix bug reported in #262, by removing quotes from spontaneous column in reactions.tsv add structure information of annotation tsv files to README Add test to the type of spontaneous in sanityCheck Fixes (PR #261): modify the subsystem annotation for the exchange reactions found in #255, by changing from Miscellaneous to Exchange/demand reactions Features (PR #258): add new reaction HMR_10133 of taurine synthesis from oxygenation of hypotaurine, as discussed in #257 the existing HMR_8759 and HMR_3911 appear to...
"Stable" API changes (Won't truly be stable until after a 1.0.0 release) Bug fixes Fixed bug in the...
Fixes (PR 460): fix: correct MAM03882 annotation, as reported in Mouse-GEM #21 Fixes (PR 429): fea...
Fixes (commit 565a306bbecbdf2548f32d6500d9bab4c6f114ee): change reaction IDs conflicting to recent c...
Features (PR #245): a new column metMAID is added to metabolites.tsv, according to the plan proposed...
Features (PR #440, #437): add compartment information to genes.tsv based on SwissProt annotation, Ce...
Main improvements in this PR: Features (PR #393): speed up importYaml in loading model fields Fea...
Fixes (PR #351): remove duplicated reactions, as reported in #344 Fixes (PR #343): sync met ids wi...
Style (PR #294): add and reformat citations in README Fixes (PR #292): replace deprecated Ensembl ...
Fixes (PR #222, #216): revise GPR for HMR_4137 as suggested by #214 add PDHA2 gene as an isoenzyme o...
Fix: remove non-metabolic genes, discovered using the GPT language model, from subsystems : #485 res...
Fixes (PR #643) remove MAR20015, MAR20014, MAR20052 for being duplicates of MAR04689, MAR06981, MAR0...
Fixes (PR #206): curate subSystems names as proposed in #205 replace 131 Metabolism of xenobiotics b...
Fixes (PR #555, #541, #538, #532, #529, #525) resolve duplicate krebs cycle reactions catalyzed by a...
Fix (commit 339ff64ccc32fccc0b3be2c33f6ff199bc6bcc53): revise workflow to avoid duplicated checks ...
Main improvements in this PR: Fixes (PR 460): fix: correct MAM03882 annotation, as reported in Mous...
"Stable" API changes (Won't truly be stable until after a 1.0.0 release) Bug fixes Fixed bug in the...
Fixes (PR 460): fix: correct MAM03882 annotation, as reported in Mouse-GEM #21 Fixes (PR 429): fea...
Fixes (commit 565a306bbecbdf2548f32d6500d9bab4c6f114ee): change reaction IDs conflicting to recent c...
Features (PR #245): a new column metMAID is added to metabolites.tsv, according to the plan proposed...
Features (PR #440, #437): add compartment information to genes.tsv based on SwissProt annotation, Ce...
Main improvements in this PR: Features (PR #393): speed up importYaml in loading model fields Fea...
Fixes (PR #351): remove duplicated reactions, as reported in #344 Fixes (PR #343): sync met ids wi...
Style (PR #294): add and reformat citations in README Fixes (PR #292): replace deprecated Ensembl ...
Fixes (PR #222, #216): revise GPR for HMR_4137 as suggested by #214 add PDHA2 gene as an isoenzyme o...
Fix: remove non-metabolic genes, discovered using the GPT language model, from subsystems : #485 res...
Fixes (PR #643) remove MAR20015, MAR20014, MAR20052 for being duplicates of MAR04689, MAR06981, MAR0...
Fixes (PR #206): curate subSystems names as proposed in #205 replace 131 Metabolism of xenobiotics b...
Fixes (PR #555, #541, #538, #532, #529, #525) resolve duplicate krebs cycle reactions catalyzed by a...
Fix (commit 339ff64ccc32fccc0b3be2c33f6ff199bc6bcc53): revise workflow to avoid duplicated checks ...
Main improvements in this PR: Fixes (PR 460): fix: correct MAM03882 annotation, as reported in Mous...
"Stable" API changes (Won't truly be stable until after a 1.0.0 release) Bug fixes Fixed bug in the...
Fixes (PR 460): fix: correct MAM03882 annotation, as reported in Mouse-GEM #21 Fixes (PR 429): fea...
Fixes (commit 565a306bbecbdf2548f32d6500d9bab4c6f114ee): change reaction IDs conflicting to recent c...