deeptools/pyBigWig: 0.3.15
- Devon Ryan
- Gökçen Eraslan
- Björn Grüning
- Ricardo Silva
- Patrick Marks
- Fidel Ramirez
- Edward Betts
Publication date
May 2019
DOIAbstract
Copied over changes from libBigWig dealing with segfaults when accessing remote files
Copied over changes from libBigWig dealing with segfaults when accessing remote files
SLBP crosslink sites bigwig files Data source: ENCODE consortium SLBP eCILP datasets Bam files wer...
Bugfix release: Fixed error message when downloading remote files and implemented proper URL decodi...
If numpy is installed prior to pyBigWig then numpy vectors can be used to create bigWig files. Addit...
pyBigWig can now be installed without support for remote files (this was issue #29). If python can't...
Copy over libBigWig 0.1.4, which should fix JBrowse/et al. being able to parse the bigWig files
Fixed issue #36 and #39 . Now approximately one billion contigs are supported when writing files. Th...
Fixed a segfault caused by a misplaced reference count decrementation in version 0.3.8 (when numpy i...
Build and wheel updates courtesy of @EricR86 https://github.com/deeptools/pyBigWig/pull/13
Fixed linking on OSX. This led to issues like #58 and was fixed by @gokceneraslan in #6
Includes libBigWig version 0.3.1, which fixes a potential bug with the creation of bigWig files with...
Fixed compilation without curl Added at least partial support for pandas (issue #63
Fixed a memory leak when numpy is used during file creation. Thanks to @pmarks for both finding and ...
Fixed #91, wherein there was a memory leak if many files were written in a single python session. Fi...
Fixed a bug where bigWig files with more than ~256 chromsomes would cause a segmentation fault (issu...
Fixed some python 3 builds (PR #76 from @rmsds ) Started testing for python 3.7 and dropped official...
SLBP crosslink sites bigwig files Data source: ENCODE consortium SLBP eCILP datasets Bam files wer...
Bugfix release: Fixed error message when downloading remote files and implemented proper URL decodi...
If numpy is installed prior to pyBigWig then numpy vectors can be used to create bigWig files. Addit...
pyBigWig can now be installed without support for remote files (this was issue #29). If python can't...
Copy over libBigWig 0.1.4, which should fix JBrowse/et al. being able to parse the bigWig files
Fixed issue #36 and #39 . Now approximately one billion contigs are supported when writing files. Th...
Fixed a segfault caused by a misplaced reference count decrementation in version 0.3.8 (when numpy i...
Build and wheel updates courtesy of @EricR86 https://github.com/deeptools/pyBigWig/pull/13
Fixed linking on OSX. This led to issues like #58 and was fixed by @gokceneraslan in #6
Includes libBigWig version 0.3.1, which fixes a potential bug with the creation of bigWig files with...
Fixed compilation without curl Added at least partial support for pandas (issue #63
Fixed a memory leak when numpy is used during file creation. Thanks to @pmarks for both finding and ...
Fixed #91, wherein there was a memory leak if many files were written in a single python session. Fi...
Fixed a bug where bigWig files with more than ~256 chromsomes would cause a segmentation fault (issu...
Fixed some python 3 builds (PR #76 from @rmsds ) Started testing for python 3.7 and dropped official...
SLBP crosslink sites bigwig files Data source: ENCODE consortium SLBP eCILP datasets Bam files wer...
Bugfix release: Fixed error message when downloading remote files and implemented proper URL decodi...
If numpy is installed prior to pyBigWig then numpy vectors can be used to create bigWig files. Addit...
Add to ORKG