Publication date
December 2020
DOIAbstract
The main change is to choose a set of primers to trim, issue #625. See the milestone for a list of other issues
The main change is to choose a set of primers to trim, issue #625. See the milestone for a list of other issues
<p>Primer positions are indicated from the c-Kit sequence published through the NCBI accession numbe...
<p>ColFol-for ColFol-rev are the Sanger primers. 454-ColFol-for and 454-Col307-rev are the primers f...
<p>All primers were designed using the software <i>Primer Express</i> Version 1.0.</p>a<p>fw, forwar...
The big change is #442, adding a de novo assembly method to the standard remapping method. Also incl...
<p>F: forward primer; R: reverse primer.</p><p>Cutting sites are underlined.</p><p>Primers used in t...
Primers used for generation of the NEO specific linear replacement cassette fragments.</p
bug fix cutadapt rule that affected fwd_1 settings: primers weren't properly translated to RC. This ...
<p>*underlined regions are mutated bases</p><p>List of primers used in the study.</p
The publication of the minimum information for the publication of real-time quantitative PCR experi-...
Add HCV reports (#412), then update HCV resistance rules (#436). Combine whole-genome and MidHCV sa...
Changes Adds an optional step to trim primers when a bed with primer regions is provided with --pri...
Upgrade to HIVdb 9.4 (#884) and fix alignment bugs (#887, #963, #899). See the milestone for a compl...
Parenthetical numbers mean there are multiple items per topic; strikeout = deletions; underline = ne...
The main changes were: Added a stitched consensus #745 Updated to HIVdb 9.0 #686 Noncoding regions ...
A summary of the changes is: • Renumbered checklist items to accommodate proposed additions and dele...
<p>Primer positions are indicated from the c-Kit sequence published through the NCBI accession numbe...
<p>ColFol-for ColFol-rev are the Sanger primers. 454-ColFol-for and 454-Col307-rev are the primers f...
<p>All primers were designed using the software <i>Primer Express</i> Version 1.0.</p>a<p>fw, forwar...
The big change is #442, adding a de novo assembly method to the standard remapping method. Also incl...
<p>F: forward primer; R: reverse primer.</p><p>Cutting sites are underlined.</p><p>Primers used in t...
Primers used for generation of the NEO specific linear replacement cassette fragments.</p
bug fix cutadapt rule that affected fwd_1 settings: primers weren't properly translated to RC. This ...
<p>*underlined regions are mutated bases</p><p>List of primers used in the study.</p
The publication of the minimum information for the publication of real-time quantitative PCR experi-...
Add HCV reports (#412), then update HCV resistance rules (#436). Combine whole-genome and MidHCV sa...
Changes Adds an optional step to trim primers when a bed with primer regions is provided with --pri...
Upgrade to HIVdb 9.4 (#884) and fix alignment bugs (#887, #963, #899). See the milestone for a compl...
Parenthetical numbers mean there are multiple items per topic; strikeout = deletions; underline = ne...
The main changes were: Added a stitched consensus #745 Updated to HIVdb 9.0 #686 Noncoding regions ...
A summary of the changes is: • Renumbered checklist items to accommodate proposed additions and dele...
<p>Primer positions are indicated from the c-Kit sequence published through the NCBI accession numbe...
<p>ColFol-for ColFol-rev are the Sanger primers. 454-ColFol-for and 454-Col307-rev are the primers f...
<p>All primers were designed using the software <i>Primer Express</i> Version 1.0.</p>a<p>fw, forwar...
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