neurostuff/NiMARE: 0.0.10

Release Notes The 0.0.10 release includes a number of bug fixes and improvements. The two biggest changes are (1) support for fetching and using NeuroQuery's database, and (2) a reorganization of how Neurosynth's database is fetched and converted. Both databases now use a shared format, which separates coordinates, metadata, and features into different files with a semi-standardized naming structure. The fetching and conversion functions also now support accessing multiple vocabularies provided by these databases. Breaking changes The fetching functions for the Neurosynth and NeuroQuery databases now have a data_dir parameter, instead of a path parameter. The Neurosynth and NeuroQuery databases are now in a very different format, so the fetching and conversion functions operate quite differently. The low_memory parameter employed in many NiMARE classes and functions has been replaced with memory_limit. ✨ Enhancements Add new methods to fetch and convert the NeuroQuery database. Support the new format for the Neurosynth database. A new decoding method for regions of interest taken from Neurosynth: ROIAssociationDecoder. Custom __repr__ methods in many NiMARE classes, so now printing the object will show relevant information. Reduce memory usage in CBMA Estimators. Bug fixes Extract relevant metadata in kernel transformers for Dataset-based transform calls. Reference selected features instead of initial features in CorrelationDecoder. Separate IJK calculation from coordinate space conversion. Changes since last stable release [TST] Test minimum versions of dependencies (#567) @tsalo [FIX] Add pytest to docs dependencies (#572) @tsalo [ENH, DOC] Document and use data directory approach in fetching functions (#570) @tsalo [TST] Reorganize tests for speed (#571) @tsalo [ENH] Add NeuroQuery 6308 vocab to resources (#568) @tsalo [DOC] Improve documentation of decoders (#506) @JulioAPeraza [DOC] Fill out CBMA docstrings (#564) @tsalo [REF] Reduce memory in CBMA Estimators (#562) @tsalo [FIX] Drop NQ tfidf features from manifest (#561) @tsalo [FIX] Separate IJK calculation from coordinate space conversion (#556) @tsalo [FIX] Reference selected features instead of initial features in CorrelationDecoder (#560) @tsalo [DOC] Replace map and threshold for MACM example (#558) @tsalo [FIX, DOC] Use appropriate structure in Neurosynth download example (#554) @tsalo [DOC] Add admonition to about.rst linking to new site (#552) @tsalo [DOC] Update docstrings (#551) @tsalo [ENH] Support new format for Neurosynth and NeuroQuery data (#535) @tsalo [DOC] Update citation for Enge et al. (2021) (#549) @alexenge [FIX] Use resample=True in IBMA examples (#546) @tsalo [FIX] Extract relevant metadata in kernel transformers for Dataset-based transform calls (#548) @tsalo [DOC] Update ecosystem figure and documentation (#545) @tsalo [ENH] Do not apply IBMA methods to voxels with zeros or NaNs (#544) @tsalo [REF] Remove unused dependencies and unimplemented workflow (#541) @tsalo [DOC] Change napoleon settings (#540) @tsalo [ENH] Add ROI association decoder (#536) @tsalo [ENH] Add custom __repr__ methods (#538) @tsalo [FIX] Update CircleCI config to fix recent bug (#537) @tsalo [ENH] Replace low_memory with memory_limit and reduce memory bottlenecks (#520) @tsal