Python code to simulate mouse, monkey and human brains

This archive contains the python codes to run the TVB-AdEx model of mouse, monkey and human brains. The models run in The Virtual Brain simulator, where AdEx mean-fields were implemented. This model reproduces two brain states, asynchronous activity similar to wakefulness, and slow-wave activiy similar to sleep and anesthesia. The human model is described in the following papers: Goldman, J.S., Kusch, L., Yalcinkaya, B.H., Depannemaecker, D., Nghiem, T-A., Jirsa, V. and Destexhe, A. Brain-scale emergence of slow-wave synchrony and highly responsive asynchronous states based on biologically realistic population models simulated in The Virtual Brain. bioRxiv (2020): https://www.biorxiv.org/content/10.1101/2020.12.28.424574v1 Goldman, J.S., Kusch, L., Aquilue, D., Yalcinkaya, B.H., Depannemaecker, D., Ancourt, K., Nghiem, T-A., Jirsa, V. and Destexhe, A. A comprehensive neural simulation of slow-wave sleep and highly responsive wakefulness dynamics. Frontiers in Computational Neuroscience 16: 1058957, 2022. DOI: https://doi.org/10.3389/fncom.2022.1058957 See these papers for details. The mouse and macaque brain models were built in a very similar way. This work was financed by the Human Brain Project, under the direction of Alain Destexhe